From 204a308be0f741726b9a620d88fbc22b22124c81 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Fri, 29 Dec 2023 18:55:37 +0000
Subject: Namespace all modules under gn2.
We move all modules under a gn2 directory. This is important for
"correct" packaging and deployment as a Guix service.
---
gn2/wqflask/templates/oauth2/create-resource.html | 89 ++++++
gn2/wqflask/templates/oauth2/create-role.html | 46 +++
.../templates/oauth2/data-list-genotype.html | 166 ++++++++++
gn2/wqflask/templates/oauth2/data-list-mrna.html | 168 ++++++++++
.../templates/oauth2/data-list-phenotype.html | 209 ++++++++++++
gn2/wqflask/templates/oauth2/data-list.html | 53 ++++
gn2/wqflask/templates/oauth2/display_error.html | 10 +
gn2/wqflask/templates/oauth2/group.html | 114 +++++++
.../templates/oauth2/group_join_or_create.html | 99 ++++++
gn2/wqflask/templates/oauth2/join-requests.html | 73 +++++
gn2/wqflask/templates/oauth2/list_roles.html | 80 +++++
gn2/wqflask/templates/oauth2/login.html | 47 +++
gn2/wqflask/templates/oauth2/masquerade.html | 39 +++
gn2/wqflask/templates/oauth2/profile_nav.html | 64 ++++
gn2/wqflask/templates/oauth2/register_user.html | 62 ++++
gn2/wqflask/templates/oauth2/request_error.html | 32 ++
gn2/wqflask/templates/oauth2/resources.html | 58 ++++
gn2/wqflask/templates/oauth2/role.html | 56 ++++
gn2/wqflask/templates/oauth2/view-group-role.html | 102 ++++++
gn2/wqflask/templates/oauth2/view-resource.html | 352 +++++++++++++++++++++
gn2/wqflask/templates/oauth2/view-user.html | 48 +++
21 files changed, 1967 insertions(+)
create mode 100644 gn2/wqflask/templates/oauth2/create-resource.html
create mode 100644 gn2/wqflask/templates/oauth2/create-role.html
create mode 100644 gn2/wqflask/templates/oauth2/data-list-genotype.html
create mode 100644 gn2/wqflask/templates/oauth2/data-list-mrna.html
create mode 100644 gn2/wqflask/templates/oauth2/data-list-phenotype.html
create mode 100644 gn2/wqflask/templates/oauth2/data-list.html
create mode 100644 gn2/wqflask/templates/oauth2/display_error.html
create mode 100644 gn2/wqflask/templates/oauth2/group.html
create mode 100644 gn2/wqflask/templates/oauth2/group_join_or_create.html
create mode 100644 gn2/wqflask/templates/oauth2/join-requests.html
create mode 100644 gn2/wqflask/templates/oauth2/list_roles.html
create mode 100644 gn2/wqflask/templates/oauth2/login.html
create mode 100644 gn2/wqflask/templates/oauth2/masquerade.html
create mode 100644 gn2/wqflask/templates/oauth2/profile_nav.html
create mode 100644 gn2/wqflask/templates/oauth2/register_user.html
create mode 100644 gn2/wqflask/templates/oauth2/request_error.html
create mode 100644 gn2/wqflask/templates/oauth2/resources.html
create mode 100644 gn2/wqflask/templates/oauth2/role.html
create mode 100644 gn2/wqflask/templates/oauth2/view-group-role.html
create mode 100644 gn2/wqflask/templates/oauth2/view-resource.html
create mode 100644 gn2/wqflask/templates/oauth2/view-user.html
(limited to 'gn2/wqflask/templates/oauth2')
diff --git a/gn2/wqflask/templates/oauth2/create-resource.html b/gn2/wqflask/templates/oauth2/create-resource.html
new file mode 100644
index 00000000..479f4152
--- /dev/null
+++ b/gn2/wqflask/templates/oauth2/create-resource.html
@@ -0,0 +1,89 @@
+{%extends "base.html"%}
+{%from "oauth2/profile_nav.html" import profile_nav%}
+
+{%block title%}Create Resource{%endblock%}
+{%block css%}
+
+ {{profile_nav("resources", user_privileges)}}
+
+ {{flash_me()}}
+
+
+
+ {%if resource_category_error%}
+
+ {{resource_category_error.error}} :
+ {{resource_category_error.error_message}}
+
+ {%else%}
+
+ {%endif%}
+
+
+
+
+ {{profile_nav("roles", user_privileges)}}
+
Create Role
+
+ {{flash_me()}}
+
+ {%if group_privileges_error is defined%}
+ {{display_error("Group Privileges", group_privileges_error)}}
+ {%else%}
+ {%if "group:role:create-role" in user_privileges%}
+
+ {%else%}
+ {{display_error("Privilege", {"error":"PrivilegeError", "error_description": "You do not have sufficient privileges to create a new role."})}}
+ {%endif%}
+ {%endif%}
+
+ {{profile_nav("data", user_privileges)}}
+
+ {{flash_me()}}
+
+
+ This page needs javascript to work correctly
+
+
+
+
+
+
+
+
+
+
+ {{profile_nav("data", user_privileges)}}
+
+ {{flash_me()}}
+
+
+ This page needs javascript to work correctly
+
+
+
+
+
+
+
+
+
+
+ {{profile_nav("data", user_privileges)}}
+
+ {{flash_me()}}
+
+
+ This page needs javascript to work correctly
+
+
+
+
+
+
+
+
+
+
+
+ {{profile_nav("data", user_privileges)}}
+
+ {{flash_me()}}
+
+
+
{{title}} :
+
+
+
+{{the_error.error}}:
+{{the_error.error_description}}
+
+{%endmacro%}
diff --git a/gn2/wqflask/templates/oauth2/group.html b/gn2/wqflask/templates/oauth2/group.html
new file mode 100644
index 00000000..f4c29d18
--- /dev/null
+++ b/gn2/wqflask/templates/oauth2/group.html
@@ -0,0 +1,114 @@
+{%extends "base.html"%}
+{%from "oauth2/profile_nav.html" import profile_nav%}
+{%from "oauth2/display_error.html" import display_error%}
+{%block title%}View User{%endblock%}
+{%block content%}
+
+ {{profile_nav("group", user_privileges)}}
+
+ {{flash_me()}}
+
+ {%if group_error is defined%}
+
+ {{display_error("Group", group_error)}}
+
+ {%else%}
+
+
+
+
+ Group Information
+
+
+ Name
+ Metadata
+ Actions
+
+
+
+
+
+
+ {{group.group_name}}
+
+ Key Value
+ Edit
+
+
+ Delete
+
+
+
+ {%for key,val in group.group_metadata.items()%}
+
+ {{key.split("_") | map("capitalize") | join(" ")}}
+ {{val}}
+
+ {%endfor%}
+
+
+
+
+
+
+
+
+
+ Group Users
+
+
+ Name
+ Email
+ Actions
+
+
+
+
+ {%for user in users%}
+
+ {{user.name}}
+ {{user.email}}
+
+ Remove
+
+
+ {%else%}
+
+
+ {%if user_error is defined%}
+
+
+
+ {{user_error.error}}
+ {{user_error.error_description}}
+ {%else%}
+ No users found for this group
+ {%endif%}
+
+
+ {%endfor%}
+
+
+
+
+ {%endif%}
+
+
+ {{profile_nav("group", user_privileges)}}
+
+
Join or Create Group
+
+ {{flash_me()}}
+
+ {%if group_join_request is defined and group_join_request.exists %}
+
+ You have an active request to join a group.
+
+
+
+ You cannot create a group, or request to join a new group until your
+ currently active request has been either accepted or rejected.
+
+ {%else%}
+
You can
+
+ {%if groups | length > 0 %}
+
+
+ For most users, this is the preffered choice. You request access to an
+ existing group, and the group leader will chose whether or not to add you to
+ their group.
+
+
You can only be a member of a single group.
+
+
+
+
+
or
+ {%else%}
+
+ There an currently no groups to join.
+
+ {%endif%}
+
+
+
+ Creating a new group automatically makes you that group's administrator.
+
+
+
You can only be a member of a single group.
+
+
+
+ {%endif%}
+
+ {{profile_nav("group", user_privileges)}}
+
+ {{flash_me()}}
+
+
+
+
+ Join Requests
+
+
+ Name
+ Email
+ Request Date/Time
+ Status
+ Message
+ Actions
+
+
+
+
+ {%for request in requests%}
+
+ {{request.name}}
+ {{request.email}}
+ {{datetime_string(request.timestamp)}}
+ {{request.status}}
+ {{request.message}}
+
+
+
+
+
+
+
+ {%else%}
+
+
+ {%if error is defined %}
+ {{display_error("Join Requests", error)}}
+ {%else%}
+ No one has requested to join your group yet.
+ {%endif%}
+
+
+ {%endfor%}
+
+
+
+
+
+ {{profile_nav("roles", user_privileges)}}
+
Roles
+
+ {{flash_me()}}
+
+
+
+
Your System-Level Roles
+
+ {%for role in roles %}
+
+ {{role.role_name}}
+
+ {%else%}
+
+ No roles attached to this user
+
+ {%endfor%}
+
+
+
+
+
Group-Wide Roles
+
+ {%if "group:role:create-role" in user_privileges%}
+
New Group Role
+ {%endif%}
+
+ {%if group_roles_error is defined%}
+ {{display_error("Group Roles", group_role_error)}}
+ {%else%}
+
+ Group Roles
+
+
+ Role Name
+ Actions
+
+
+
+ {%for grole in group_roles%}
+
+ {{grole.role.role_name}}
+
+
+ View
+
+
+
+ {%else%}
+
+
+
+
+
+ No group roles found
+
+
+ {%endfor%}
+
+
+ {%endif%}
+
+
+
+
+
+ {{profile_nav("masquerade", user_privileges)}}
+
+ {{flash_me()}}
+
+ {%if users_error is defined%}
+ {{display_error("Users", users_error)}}
+ {%else%}
+
+ {%endif%}
+
+ {{profile_nav("error", user_privileges)}}
+
ERROR
+
+ {{flash_me()}}
+
+
+
+
+
+ Error code
+ {{response.status}}[{{response.status_code}}]
+
+ URI
+ {{response.url}}
+
+ Content Type
+ {{response.content_type or "-"}}
+
+ {{response.content}}
+ {{response.content}}
+
+
+
+
+
+
+ {{profile_nav("resources", user_privileges)}}
+
Resources
+
+ {{flash_me()}}
+
+
+
+
+
+
+ Resources
+
+
+ Name
+ Category
+
+
+
+ {%for resource in resources %}
+
+
+
+ {{resource.resource_name}}
+
+
+ {{resource.resource_category.resource_category_key}}
+
+ {%else%}
+
+
+
+ The user has no access to any resource.
+
+
+
+ {%endfor%}
+
+
+
+
+
+
+
+ {{profile_nav("roles", user_privileges)}}
+
Role: {{role.role_name}}
+
+ {{flash_me()}}
+
+
+
+
+
+ {{role.role_name}}
+
+
+
+
+ privilege id description
+
+ {%for privilege in role.privileges:%}
+
+ {{privilege.privilege_id}}
+ {{privilege.privilege_description}}
+
+ {%else%}
+
+
+
+
+ No privileges found for this role.
+
+
+ {%endfor%}
+
+
+
+
+
+
+
+
+
+
+ {{profile_nav("roles", user_privileges)}}
+
View Group Role
+
+ {{flash_me()}}
+
+
+
+
Role Details
+ {%if group_role_error is defined%}
+ {{display_error("Group Role", group_role_error)}}
+ {%else%}
+
+ Details for '{{group_role.role.role_name}}' Role
+
+
+ Privilege
+ Description
+ Action
+
+
+
+ {%for privilege in group_role.role.privileges%}
+
+ {{privilege.privilege_id}}
+ {{privilege.privilege_description}}
+
+
+
+
+ {%endfor%}
+
+
+ {%endif%}
+
+
+
+
Other Privileges
+
+ Other Privileges not Assigned to this Role
+
+
+ Privilege
+ Description
+ Action
+
+
+
+
+ {%for priv in group_privileges%}
+
+ {{priv.privilege_id}}
+ {{priv.privilege_description}}
+
+
+
+
+ {%else%}
+
+
+
+
+
+ All privileges assigned!
+
+
+ {%endfor%}
+
+
+
+
+
+
+
+ {{profile_nav("resources", user_privileges)}}
+
Resources
+
+ {{flash_me()}}
+
+
+
+ {%if resource_error is defined %}
+ {{display_error("Resource", resource_error)}}
+ {%else%}
+
+
Resource Details
+
+ Resource: {{resource.resource_name}}
+
+
+ Name
+ Category
+ Actions
+
+
+
+
+
+ {{resource.resource_name}}
+ {{resource.resource_category.resource_category_description}}
+
+
+
+
+ Edit
+
+
+ Delete
+
+
+
+
+
+
+
+
Resource Data
+
+ Resource Data
+
+
+ {%if resource.resource_category.resource_category_key == "phenotype"%}
+ Trait
+ Description
+ Year
+ {%endif%}
+ Dataset Name
+ Full Name
+ Actions
+
+
+
+
+ {%for data_item in resource.resource_data:%}
+
+ {%if resource.resource_category.resource_category_key == "phenotype"%}
+
+
+ {{data_item.PublishXRefId}}
+
+
+ {{data_item.description}}
+
+ {%if data_item.PubMed_ID%}
+
+ {{data_item.Year}}
+
+ {%else%}
+ {{data_item.Year}}
+ {%endif%}
+
+ {%endif%}
+
+
+ {{data_item.dataset_name}}
+
+
+ {{data_item.dataset_fullname}}
+
+
+
+
+ {%else%}
+
+
+
+
+
+ No linked data.
+
+
+ {%endfor%}
+
+
+
+
+
+
+
Unlinked Data
+
+ Link Data
+
+
+ {%if resource.resource_category.resource_category_key == "phenotype"%}
+ Trait
+ Description
+ Year
+ {%endif%}
+ Dataset Name
+ Dataset FullName
+ Actions
+
+
+
+ {%if unlinked_error is defined%}
+ {{display_error("Unlinked Data Error", unlinked_error)}}
+ {%else%}
+ {%for data_item in unlinked_data:%}
+
+ {%if resource.resource_category.resource_category_key == "phenotype"%}
+
+
+ {{data_item.PublishXRefId}}
+
+
+ {{data_item.description}}
+
+ {%if data_item.PubMed_ID%}
+
+ {{data_item.Year}}
+
+ {%else%}
+ {{data_item.Year}}
+ {%endif%}
+
+ {%endif%}
+
+
+ {{data_item.dataset_name}}
+
+
+ {{data_item.dataset_fullname}}
+
+
+
+
+ {%else%}
+
+
+
+ No data to link.
+ {%endfor%}
+ {%endif%}
+
+
+
+
+
+
User Roles
+ {%if users_n_roles_error is defined%}
+ {{display_error("Users and Roles", users_n_roles_error)}}
+ {%else%}
+
+ User Roles
+
+
+ User Email
+ User Name
+ User Group
+ Assigned Roles
+
+
+
+ {%for user_row in users_n_roles%}
+
+ {{user_row.user.email}}
+ {{user_row.user.name}}
+
+ {{user_row.user_group.group_name}}
+ Role
+ Action
+
+ {%for grole in user_row.roles%}
+
+
+
+ {{grole.role_name}}
+
+
+
+
+
+
+ {%endfor%}
+ {%else%}
+
+
+
+
+
+
+ There are no users assigned any role for this resource.
+
+
+
+ {%endfor%}
+
+
+ {%endif%}
+
+
+
+
Assign
+ {%if group_roles_error is defined%}
+ {{display_error("Group Roles", group_roles_error)}}
+ {%elif users_error is defined%}
+ {{display_error("Users", users_error)}}
+ {%else%}
+
+ {%endif%}
+
+ {%endif%}
+
+
+
+
+ {{profile_nav("dashboard", user_privileges)}}
+
View User
+
+ {{flash_me()}}
+
+
+
+ {%if user_details%}
+
Name : {{user_details.name}}
+
E-Mail : {{user_details.email}}
+ {%if user_details.group%}
+
Group :{{user_details.group.group_name}}
+ {%else%}
+
+ User is not a member of a group.
+
+
+ {%if group_join_request is defined and group_join_request.exists %}
+
+ You have an active join request to a group.
+
+ {%else%}
+
+ Join or Create group
+
+ {%endif%}
+
+ {%endif%}
+ {%else%}
+
No details found.
+ {%endif%}
+
+
+
+
+