From b63b91cf52c148c6f7091e3845bb3fdb11052d62 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Wed, 6 Mar 2024 14:57:54 +0300 Subject: Use AUTH_SERVER_URL setting from flask.current_app not gn2.utility.tools --- gn2/wqflask/oauth2/data.py | 19 ++++++++----------- 1 file changed, 8 insertions(+), 11 deletions(-) (limited to 'gn2/wqflask/oauth2/data.py') diff --git a/gn2/wqflask/oauth2/data.py b/gn2/wqflask/oauth2/data.py index a1dfdf95..29d68be0 100644 --- a/gn2/wqflask/oauth2/data.py +++ b/gn2/wqflask/oauth2/data.py @@ -15,14 +15,13 @@ from gn2.wqflask.oauth2.request_utils import with_flash_error from gn2.jobs import jobs from .ui import render_ui from .request_utils import process_error -from .client import oauth2_get, oauth2_post +from .client import oauth2_get, oauth2_post, authserver_uri data = Blueprint("data", __name__) def __search_mrna__(query, template, **kwargs): - from gn2.utility.tools import AUTH_SERVER_URL species_name = kwargs["species_name"] - search_uri = urljoin(AUTH_SERVER_URL, "auth/data/search") + search_uri = urljoin(authserver_uri(), "auth/data/search") datasets = oauth2_get( "auth/data/search", json = { @@ -45,9 +44,8 @@ def __selected_datasets__(): request.form.get("selected", [])) def __search_genotypes__(query, template, **kwargs): - from gn2.utility.tools import AUTH_SERVER_URL species_name = kwargs["species_name"] - search_uri = urljoin(AUTH_SERVER_URL, "auth/data/search") + search_uri = urljoin(authserver_uri(), "auth/data/search") datasets = oauth2_get( "auth/data/search", json = { @@ -61,7 +59,7 @@ def __search_genotypes__(query, template, **kwargs): return render_ui(template, search_uri=search_uri, **datasets, **kwargs) def __search_phenotypes__(query, template, **kwargs): - from gn2.utility.tools import GN_SERVER_URL, AUTH_SERVER_URL + from gn2.utility.tools import GN_SERVER_URL page = int(request.args.get("page", 1)) per_page = int(request.args.get("per_page", 50)) selected_traits = request.form.getlist("selected_traits") @@ -71,10 +69,10 @@ def __search_phenotypes__(query, template, **kwargs): template, traits=[], per_page=per_page, query=query, selected_traits=selected_traits, search_results=search_results, search_endpoint=urljoin( - AUTH_SERVER_URL, "auth/data/search"), - gn_server_url = AUTH_SERVER_URL, + authserver_uri(), "auth/data/search"), + gn_server_url = authserver_uri(), results_endpoint=urljoin( - AUTH_SERVER_URL, + authserver_uri(), f"auth/data/search/phenotype/{job_id}"), **kwargs) return oauth2_get("auth/data/search", json={ @@ -124,7 +122,6 @@ def json_search_mrna() -> Response: @data.route("/phenotype/search", methods=["POST"]) def json_search_phenotypes() -> Response: """Search for phenotypes.""" - from gn2.utility.tools import AUTH_SERVER_URL form = request.json def __handle_error__(err): error = process_error(err) @@ -138,7 +135,7 @@ def json_search_phenotypes() -> Response: "query": form.get("query", ""), "per_page": int(form.get("per_page", 50)), "page": int(form.get("page", 1)), - "auth_server_uri": AUTH_SERVER_URL, + "auth_server_uri": authserver_uri(), "selected_traits": form.get("selected_traits", []) }).either(__handle_error__, jsonify) -- cgit v1.2.3