From ae572dfe805defc4d40d173325178f5b08c080bf Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 25 Sep 2024 07:27:17 -0500
Subject: DEBUG: Log out R/qtl2 or Pair-Scan results

Running R/qtl2 and Pair-Scan results in the production container
fails, but somehow runs on production. This implies a possible
configuration thing that is not explicit. Hopefully this debug helps
surface the cause to enable fixing.
---
 gn2/wqflask/marker_regression/rqtl_mapping.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

(limited to 'gn2/wqflask/marker_regression')

diff --git a/gn2/wqflask/marker_regression/rqtl_mapping.py b/gn2/wqflask/marker_regression/rqtl_mapping.py
index 571935cb..c52add46 100644
--- a/gn2/wqflask/marker_regression/rqtl_mapping.py
+++ b/gn2/wqflask/marker_regression/rqtl_mapping.py
@@ -12,6 +12,8 @@ from urllib.parse import urljoin
 
 import numpy as np
 
+from gn3.debug import __pk__
+
 from gn2.base.webqtlConfig import TMPDIR
 from gn2.base.trait import create_trait
 from gn2.utility.redis_tools import get_redis_conn
@@ -55,8 +57,10 @@ def run_rqtl(trait_name, vals, samples, dataset, pair_scan, mapping_scale, model
     if perm_strata_list:
         post_data["pstrata"] = True
 
-    rqtl_output = requests.post(urljoin(GN3_LOCAL_URL, "api/rqtl/compute"),
-                                data=post_data).json()
+    rqtl_output = __pk__(
+        "R/qtl or Pair-Scan results",
+        requests.post(urljoin(GN3_LOCAL_URL, "api/rqtl/compute"),
+                      data=post_data).json())
     if num_perm > 0:
         return rqtl_output['perm_results'], rqtl_output['suggestive'], rqtl_output['significant'], rqtl_output['results']
     else:
-- 
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