From beb6a9360ecc9edca19692e4081efc15292fb7d1 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 20 Apr 2016 08:28:44 +0000
Subject: [PATCH 018/100] Find external tools: refactored code to work with GNU
 Guix

---
 etc/default_settings.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

(limited to 'etc')

diff --git a/etc/default_settings.py b/etc/default_settings.py
index 0c7d7bad..929bd687 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -1,3 +1,5 @@
+import os
+
 LOGFILE = "/var/log/genenetwork/wqflask.log"
 
 # This is needed because Flask turns key errors into a
@@ -20,5 +22,7 @@ SERVER_PORT = 5003
 SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc'
 
 # Path overrides for Genenetwork
-# PYLMM_PATH = 'UNUSED'
-
+HOME=os.environ.get('HOME')
+PYLMM_PATH = HOME+"/izip/git/opensource/python/pylmm_gn2/"
+PLINK_PATH = HOME+"/.guix-profile/bin"
+GEMMA_PATH = HOME+"/.guix-profile/bin"
-- 
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