From fbd60cd5fccdd6e664865a74fd1a4433fc1ec55d Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 8 Jun 2016 10:23:53 +0000 Subject: JOSS: added orcid for Nick Furlotte --- doc/joss/2016/paper.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'doc/joss') diff --git a/doc/joss/2016/paper.md b/doc/joss/2016/paper.md index 9ac323d2..6b640836 100644 --- a/doc/joss/2016/paper.md +++ b/doc/joss/2016/paper.md @@ -17,7 +17,8 @@ authors: - name: Arthur Centeno orcid: 0000-0003-3142-2081 affiliation: University of Tennessee Health Science Center, USA - - name: Nick Furlotte + - name: Nicholas Furlotte + orcid: 0000-0002-9096-6276 - name: Harm Nijveen orcid: 0000-0002-9167-4945 affiliation: Wageningen University, The Netherlands -- cgit v1.2.3 From 47cf69f2f2fc8243b94f17387547c1fc12fb60ab Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 9 Jun 2016 09:07:34 +0000 Subject: Docs: add SVG graph --- doc/README.org | 2 +- doc/joss/2016/paper.md | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) (limited to 'doc/joss') diff --git a/doc/README.org b/doc/README.org index bcc8a65e..681357ef 100644 --- a/doc/README.org +++ b/doc/README.org @@ -24,7 +24,7 @@ * Introduction -Large system deployments can get very complex. In this document we +Large system deployments can get very [[http://biobeat.org/gn2.svg][complex]]. In this document we explain the GeneNetwork version 2 (GN2) reproducible deployment system which is based on GNU Guix (see also Pjotr's [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]). The Guix system can be used to install GN with all its files and dependencies. diff --git a/doc/joss/2016/paper.md b/doc/joss/2016/paper.md index 6b640836..7c6f76cc 100644 --- a/doc/joss/2016/paper.md +++ b/doc/joss/2016/paper.md @@ -69,6 +69,8 @@ database is 160GB and growing), GN is packaged with GNU Guix deployment makes it feasible to deploy and rebrand GN anywhere. +-![GN2 dependency graph](http://biobeat.org/gn2.svg) + # Future work More mapping tools will be added, including support for Genome-wide -- cgit v1.2.3 From ed482493f2fa907632bacffac7a1938e9656b0d5 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 9 Jun 2016 09:37:30 +0000 Subject: Doc: moved graph into README --- doc/README.org | 5 +++++ doc/joss/2016/paper.md | 2 -- 2 files changed, 5 insertions(+), 2 deletions(-) (limited to 'doc/joss') diff --git a/doc/README.org b/doc/README.org index 681357ef..a36d04bb 100644 --- a/doc/README.org +++ b/doc/README.org @@ -34,6 +34,11 @@ main Guix package tree and that of the Genenetwork package tree. Current supported versions can be found as the SHA values of 'gn-latest' branches of [[https://github.com/genenetwork/guix-bioinformatics/tree/gn-latest][Guix bioinformatics]] and [[https://github.com/genenetwork/guix/tree/gn-latest][GNU Guix main]]. +Graph of all runtime dependencies as installed by GNU Guix. + +-![GN2 dependency graph](http://biobeat.org/gn2.svg) + + * Quick installation recipe This is a recipe for quick and dirty installation of GN2. For diff --git a/doc/joss/2016/paper.md b/doc/joss/2016/paper.md index 7c6f76cc..6b640836 100644 --- a/doc/joss/2016/paper.md +++ b/doc/joss/2016/paper.md @@ -69,8 +69,6 @@ database is 160GB and growing), GN is packaged with GNU Guix deployment makes it feasible to deploy and rebrand GN anywhere. --![GN2 dependency graph](http://biobeat.org/gn2.svg) - # Future work More mapping tools will be added, including support for Genome-wide -- cgit v1.2.3