From b32004bc517d9a58be52662297e541c23f60355b Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Thu, 20 Aug 2020 16:01:54 +0300
Subject: Replace all references to python2.7 with python3.8

Run:

```
find . -type f -print0 | xargs -0 sed -i \
"s|lib/python2.7/site-packages|lib/python3.8/site-packages|g"
```
---
 bin/genenetwork2 | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'bin')

diff --git a/bin/genenetwork2 b/bin/genenetwork2
index dd6db7d6..5f4e0f9a 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -60,7 +60,7 @@ GN2_ID=$(cat /etc/hostname):$(basename $GN2_BASE_DIR)
 
 echo GN2_BASE_DIR=$GN2_BASE_DIR
 
-GUIX_SITE=$GN2_BASE_DIR/lib/python2.7/site-packages
+GUIX_SITE=$GN2_BASE_DIR/lib/python3.8/site-packages
 if [ -d $GUIX_SITE ]; then
     echo INFO: GN2 is running from GNU Guix
     GN2_BASE_DIR=$GUIX_SITE
@@ -105,7 +105,7 @@ echo GN2_SETTINGS=$settings
 # if [ -z $ELASTICSEARCH_PROFILE ]; then
 #     echo -e "WARNING: Elastic Search profile has not been set - use ELASTICSEARCH_PROFILE";
 # else
-#     PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python2.7/site-packages"
+#     PYTHONPATH="$PYTHONPATH${PYTHONPATH:+:}$ELASTICSEARCH_PROFILE/lib/python3.8/site-packages"
 # fi
 
 if [ -z $GN2_PROFILE ] ; then
@@ -121,7 +121,7 @@ if [ -z $GN2_PROFILE ]; then
     read -p "PRESS [ENTER] TO CONTINUE..."
 else
     export PATH=$GN2_PROFILE/bin:$PATH
-    export PYTHONPATH="$PYTHON_GN_PATH:$GN2_PROFILE/lib/python2.7/site-packages" # never inject another PYTHONPATH!!
+    export PYTHONPATH="$GN2_PROFILE/lib/python3.8/site-packages" # never inject another PYTHONPATH!!
     export R_LIBS_SITE=$GN2_PROFILE/site-library
     export JS_GUIX_PATH=$GN2_PROFILE/share/genenetwork2/javascript
     export GUIX_GTK3_PATH="$GN2_PROFILE/lib/gtk-3.0"
-- 
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