From 837ce8b9c779b1da6e4390220ccd353b289c1fca Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 20 Dec 2017 09:11:31 -0600
Subject: Bring in some earlier work - mostly documentation and startup
 handling

---
 bin/genenetwork2 | 9 +++++++++
 1 file changed, 9 insertions(+)

(limited to 'bin')

diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 5e791885..a7edb1c2 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -1,5 +1,11 @@
 #! /bin/bash
 #
+# Typical usage
+#
+#   env GN2_PROFILE=~/opt/genenetwork2-phewas ./bin/genenetwork2
+#
+# Where GN2_PROFILE points to the GNU Guix profile used for deployment.
+#
 # This will run the GN2 server (with default settings if none
 # supplied). Typically you need a GNU Guix profile which is set with
 # an environment variable (this profile is dictated by the
@@ -120,6 +126,9 @@ echo -n "dir $TMPDIR
 dbfilename gn2.rdb
 " | redis-server - &
 
+# Overrides for packages that are not yet public (currently r-auwerx)
+export R_LIBS_SITE=$R_LIBS_SITE:$HOME/.Rlibs/das1i1pm54dj6lbdcsw5w0sdwhccyj1a-r-3.3.2/lib/R/lib
+
 # Start the flask server running GN2
 cd $GN2_BASE_DIR/wqflask
 echo "Starting with $settings"
-- 
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