From 0c7106202cd0cb549e731a43a64a95116756daf6 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 22 May 2023 08:32:12 +0300
Subject: Enable running application under pdb.

Add an option to help with running the application under pdb, and add
some documentation to help other developers figure it out.
---
 bin/genenetwork2 | 12 ++++++++++++
 1 file changed, 12 insertions(+)

(limited to 'bin')

diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 57fd8588..d0aa5d71 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -221,6 +221,18 @@ fi
 # Overrides for packages that are not yet public (currently r-auwerx)
 # export R_LIBS_SITE=$R_LIBS_SITE:$HOME/.Rlibs/das1i1pm54dj6lbdcsw5w0sdwhccyj1a-r-3.3.2/lib/R/lib
 
+
+
+if [ "$1" = "--with-pdb" ] ; then
+    cd "${GN2_BASE_DIR}/wqflask"
+    cmd=$2
+    echo PYTHONPATH="${PYTHONPATH}"
+    shift ; shift
+    echo "RUNNING COMMAND python3 -m runserver.py"
+    python3 -m pdb runserver.py
+    exit $?
+fi
+
 # Start the flask server running GN2
 cd "${GN2_BASE_DIR}/wqflask"
 echo "Starting with $settings"
-- 
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