From ec6c3158a48a7d81596c848cb8b7f3a487bcc28a Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 25 Feb 2016 12:43:49 +0000
Subject: [PATCH 047/100] This commit moves the image generation dir *outside*
 the git repository.

---
 wqflask/wqflask/marker_regression/marker_regression_gn1.py | 12 ------------
 wqflask/wqflask/templates/marker_regression_gn1.html       |  2 +-
 wqflask/wqflask/views.py                                   |  7 ++++++-
 3 files changed, 7 insertions(+), 14 deletions(-)

diff --git a/wqflask/wqflask/marker_regression/marker_regression_gn1.py b/wqflask/wqflask/marker_regression/marker_regression_gn1.py
index 8a593ec4..245e3f04 100644
--- a/wqflask/wqflask/marker_regression/marker_regression_gn1.py
+++ b/wqflask/wqflask/marker_regression/marker_regression_gn1.py
@@ -28,8 +28,6 @@ import time
 import string
 from math import *
 import piddle as pid
-# import piddlePIL as pil
-# from piddle import Font
 import sys,os
 import cPickle
 import httplib, urllib
@@ -40,21 +38,11 @@ from htmlgen import HTMLgen2 as HT
 
 from base import webqtlConfig
 from base.GeneralObject import GeneralObject
-#from base.webqtlTrait import webqtlTrait
-#from base.templatePage import templatePage
 from utility import webqtlUtil
 from utility import helper_functions
 from utility import Plot
-#from utility.THCell import THCell
-#from utility.TDCell import TDCell
 from wqflask.interval_analyst import GeneUtil
 
-#from dbFunction import webqtlDatabaseFunction
-
-#import logging
-#logging.basicConfig(filename="/tmp/gn_leiyan.log", level=logging.INFO)
-#_log = logging.getLogger("gn\web\webqtl\intervalMapping\IntervalMappingPage.py")
-
 #########################################
 #      Inteval Mapping Plot Page
 #########################################
diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html
index f3f33fad..311429f8 100644
--- a/wqflask/wqflask/templates/marker_regression_gn1.html
+++ b/wqflask/wqflask/templates/marker_regression_gn1.html
@@ -143,7 +143,7 @@
             <div class="tab-pane active" id="gn1_map">
               <div class="qtlcharts">
                   {{ gifmap|safe }}
-                  <img src="/static/output/{{ filename }}.jpeg" usemap="#WebQTLImageMap">
+                  <img src="/generated/{{ filename }}.jpeg" usemap="#WebQTLImageMap">
                   {% if additiveChecked|upper == "ON" %}
                   <br>
                   <span style="white-space: nowrap;">A positive additive coefficient (green line) indicates that {{ dataset.group.parlist[1] }} alleles increase trait values. In contrast, a negative additive coefficient (orange line) indicates that {{ dataset.group.parlist[0] }} alleles increase trait values.</span>
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 929da649..b35bbbf9 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -30,7 +30,7 @@ import sqlalchemy
 from wqflask import app
 
 from flask import (render_template, request, make_response, Response,
-                   Flask, g, config, jsonify, redirect, url_for)
+                   Flask, g, config, jsonify, redirect, url_for, send_from_directory)
 
 from wqflask import search_results
 from wqflask import gsearch
@@ -53,6 +53,7 @@ from utility import temp_data
 from utility.tools import TEMPDIR
 
 from base import webqtlFormData
+from base.webqtlConfig import GENERATED_IMAGE_DIR
 from utility.benchmark import Bench
 
 from pprint import pformat as pf
@@ -173,6 +174,10 @@ def docedit():
     doc = docs.Docs(request.args['entry'])
     return render_template("docedit.html", **doc.__dict__)
 
+@app.route('/generated/<filename>')
+def generated_file(filename):
+    return send_from_directory(GENERATED_IMAGE_DIR,filename)
+
 @app.route("/help")
 def help():
     doc = docs.Docs("help")
-- 
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