From ddc7dfa6afb2ae02d6a23e345d408ec1ec73b1aa Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 8 Jul 2020 13:00:30 -0500
Subject: Removed remaining unused references to the old qtlreaper

---
 wqflask/base/trait.py                                        | 2 +-
 wqflask/utility/Plot.py                                      | 2 --
 wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py | 2 --
 wqflask/wqflask/correlation/show_corr_results.py             | 2 --
 wqflask/wqflask/correlation_matrix/show_corr_matrix.py       | 2 --
 wqflask/wqflask/heatmap/heatmap.py                           | 2 --
 wqflask/wqflask/network_graph/network_graph.py               | 2 --
 7 files changed, 1 insertion(+), 13 deletions(-)

diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 8e11c11d..ecb9dcd9 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -403,7 +403,7 @@ def retrieve_trait_info(trait, dataset, get_qtl_info=False):
                             Publication.Month, Publication.Year, PublishXRef.Sequence,
                             Phenotype.Units, PublishXRef.comments
                     FROM
-                            PublishXRef, Publication, Phenotype, PublishFreeze
+                            PublishXRef, Publication, Phenotype, PublishFreeze, InbredSet
                     WHERE
                             PublishXRef.Id = %s AND
                             Phenotype.Id = PublishXRef.PhenotypeId AND
diff --git a/wqflask/utility/Plot.py b/wqflask/utility/Plot.py
index cce8435d..9bc84d22 100644
--- a/wqflask/utility/Plot.py
+++ b/wqflask/utility/Plot.py
@@ -35,8 +35,6 @@ import sys, os
 from numarray import linear_algebra as la
 from numarray import ones, array, dot, swapaxes
 
-import reaper
-
 import webqtlUtil
 import corestats
 from base import webqtlConfig
diff --git a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py
index 5d74dc9d..09d6b9cc 100644
--- a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py
+++ b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py
@@ -35,8 +35,6 @@ import resource
 
 from pprint import pformat as pf
 
-import reaper
-
 from base.trait import create_trait
 from base import data_set
 from utility import webqtlUtil, helper_functions, corr_result_helpers
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index bc2912f2..de7a1c0c 100644
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -42,8 +42,6 @@ utils = importr("utils")
 
 from pprint import pformat as pf
 
-import reaper
-
 from base import webqtlConfig
 from utility.THCell import THCell
 from utility.TDCell import TDCell
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
index 2b9467d1..0ac94139 100644
--- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
+++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
@@ -41,8 +41,6 @@ import rpy2.robjects as robjects
 
 from pprint import pformat as pf
 
-import reaper
-
 from utility.redis_tools import get_redis_conn
 Redis = get_redis_conn()
 THIRTY_DAYS = 60 * 60 * 24 * 30
diff --git a/wqflask/wqflask/heatmap/heatmap.py b/wqflask/wqflask/heatmap/heatmap.py
index e82aa0ef..5098a184 100644
--- a/wqflask/wqflask/heatmap/heatmap.py
+++ b/wqflask/wqflask/heatmap/heatmap.py
@@ -19,8 +19,6 @@ import numpy as np
 
 from pprint import pformat as pf
 
-import reaper
-
 from base.trait import GeneralTrait
 from base import data_set
 from base import species
diff --git a/wqflask/wqflask/network_graph/network_graph.py b/wqflask/wqflask/network_graph/network_graph.py
index f41f3017..f61c40b4 100644
--- a/wqflask/wqflask/network_graph/network_graph.py
+++ b/wqflask/wqflask/network_graph/network_graph.py
@@ -40,8 +40,6 @@ import rpy2.robjects as robjects
 
 from pprint import pformat as pf
 
-import reaper
-
 from utility.THCell import THCell
 from utility.TDCell import TDCell
 from base.trait import create_trait
-- 
cgit v1.2.3