From dbc048f06a50837f59ce4d2ee7cfe84ab8e6062f Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 15 Mar 2015 14:41:14 +0300
Subject: Comment
---
wqflask/wqflask/my_pylmm/pyLMM/lmm.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
index 5aa27106..1fa7a895 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
@@ -334,7 +334,7 @@ def calculate_kinship_new(genotype_matrix, temp_data=None):
inds (columns) by snps (rows).
"""
G = np.apply_along_axis( genotype.normalize, axis=0, arr=genotype_matrix)
- return kinship(G.T),G
+ return kinship(G.T),G # G gets transposed, we'll turn this into an iterator (FIXME)
def calculate_kinship_old(genotype_matrix, temp_data=None):
"""
--
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