- {% if start_vars.tool_used == "Mapping" %}
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Computing the Maps
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n = {{ start_vars.n_samples }}
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- Method = {% if start_vars.method == "gemma" %}GEMMA {% if start_vars.use_loco == "True" %}using LOCO {% endif %}{% else %}{{ start_vars.method }}{% endif %}
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- {% set genofile_desc = start_vars.genofile.split(":")[1] %}
- Genotype File = {{ genofile_desc }}
- {% if start_vars.num_perm | int > 0 %}
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- # Permutations = {{ start_vars.num_perm }}
- {% endif %}
- {% if start_vars.num_bootstrap | int > 0 %}
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- # Bootstrap = {{ start_vars.num_bootstrap }}
- {% endif %}
- {% if start_vars.transform != "" %}
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- transform = {{ start_vars.transform }}
- {% endif %}
- {% if start_vars.maf != "" and start_vars.method != "reaper" %}
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- MAF >= {{ start_vars.maf }}
- {% endif %}
- {% if start_vars.covariates != "" and start_vars.method != "reaper" %}
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- {% set covariate_list = start_vars.covariates.split(",") %}
- Trait Covariates: {% for covariate in covariate_list %}{% set this_covariate = covariate.split(":")[0] %}{{ this_covariate }}{% if not loop.last %}, {% endif %}{% endfor %}
- {% endif %}
- {% if start_vars.control_marker != "" and start_vars.do_control == "true" and start_vars.method != "gemma" %}
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- Marker Covariate: {{ start_vars.control_marker }}
- {% endif %}
- {% else %}
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Loading {{ start_vars.tool_used }} Results...
- {% endif %}
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![](/static/gif/89.gif)
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