Development and source code on github with issue tracker and documentation. Join the mailing list and find us on IRC (#genenetwork channel). {% if version: %} -
GeneNetwork v{{ version }}
+GeneNetwork {{ version }}
{% endif %}
- GeneNetwork v{{ version }} {{ stack[0] }}
+ GeneNetwork {{ version }} {{ stack[0] }}
{{ message }} (error)
{{ stack[-3] }}
{{ stack[-2] }}
@@ -50,7 +50,7 @@
Toggle full stack trace
- GeneNetwork v{{ version }} {% for line in stack %} {{ line }}
+ GeneNetwork {{ version }} {% for line in stack %} {{ line }}
{% endfor %}
diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py
index 1e831896..f7fcd2d0 100644
--- a/wqflask/wqflask/user_manager.py
+++ b/wqflask/wqflask/user_manager.py
@@ -46,7 +46,7 @@ from wqflask.database import db_session
from wqflask import model
from utility import Bunch, Struct, after
-from utility.tools import LOG_SQL, LOG_SQLALCHEMY
+from utility.tools import LOG_SQL, LOG_SQL_ALCHEMY
import logging
from utility.logger import getLogger
@@ -69,7 +69,7 @@ class AnonUser(object):
if self.cookie:
logger.debug("already is cookie")
self.anon_id = verify_cookie(self.cookie)
-
+
else:
logger.debug("creating new cookie")
self.anon_id, self.cookie = create_signed_cookie()
@@ -78,17 +78,17 @@ class AnonUser(object):
@after.after_this_request
def set_cookie(response):
response.set_cookie(self.cookie_name, self.cookie)
-
+
def add_collection(self, new_collection):
collection_dict = dict(name = new_collection.name,
created_timestamp = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p'),
changed_timestamp = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p'),
num_members = new_collection.num_members,
members = new_collection.get_members())
-
+
Redis.set(self.key, json.dumps(collection_dict))
Redis.expire(self.key, 60 * 60 * 24 * 5)
-
+
def delete_collection(self, collection_name):
existing_collections = self.get_collections()
updated_collections = []
@@ -106,7 +106,7 @@ class AnonUser(object):
updated_collections.append(this_collection)
Redis.set(self.key, json.dumps(updated_collections))
-
+
def get_collections(self):
json_collections = Redis.get(self.key)
if json_collections == None or json_collections == "None":
@@ -117,7 +117,7 @@ class AnonUser(object):
collection['created_timestamp'] = datetime.datetime.strptime(collection['created_timestamp'], '%b %d %Y %I:%M%p')
collection['changed_timestamp'] = datetime.datetime.strptime(collection['changed_timestamp'], '%b %d %Y %I:%M%p')
return collections
-
+
def import_traits_to_user(self):
collections_list = json.loads(Redis.get(self.key))
for collection in collections_list:
@@ -131,7 +131,7 @@ class AnonUser(object):
uc.members = json.dumps(collection['members'])
db_session.add(uc)
db_session.commit()
-
+
def display_num_collections(self):
"""
Returns the number of collections or a blank string if there are zero.
@@ -217,7 +217,7 @@ class UserSession(object):
"""Actual sqlalchemy record"""
# Only look it up once if needed, then store it
try:
- if LOG_SQLALCHEMY:
+ if LOG_SQL_ALCHEMY:
logging.getLogger('sqlalchemy.pool').setLevel(logging.DEBUG)
# Already did this before
@@ -237,7 +237,7 @@ class UserSession(object):
def before_request():
g.user_session = UserSession()
g.cookie_session = AnonUser()
-
+
class UsersManager(object):
def __init__(self):
self.users = model.User.query.all()
@@ -541,9 +541,9 @@ class LoginUser(object):
import_col = "true"
else:
import_col = "false"
-
- #g.cookie_session.import_traits_to_user()
-
+
+ #g.cookie_session.import_traits_to_user()
+
return self.actual_login(user, import_collections=import_col)
else:
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 39f4a686..3882e60a 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -53,7 +53,7 @@ from wqflask.ctl import ctl_analysis
#from wqflask.trait_submission import submit_trait
from utility import temp_data
-from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION
+from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,TWITTER_POST_FETCHER_JS_PATH
from utility.helper_functions import get_species_groups
from base import webqtlFormData
@@ -148,8 +148,7 @@ def tmp_page(img_path):
@app.route("/twitter/")
def bd_files(filename):
- bd_path = app.config['TWITTER_POST_FETCHER_JS_PATH']
- return send_from_directory(bd_path, filename)
+ return send_from_directory(TWITTER_POST_FETCHER_JS_PATH, filename)
#@app.route("/data_sharing")
#def data_sharing_page():
--
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