From c39a7ca68c2584c49a86fac2d05144a1b32ccd56 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Fri, 3 May 2019 11:06:47 -0500
Subject: Added examples for fetching sample data & genotypes

---
 api_readme.md | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/api_readme.md b/api_readme.md
index 00ba25d7..d0102d67 100644
--- a/api_readme.md
+++ b/api_readme.md
@@ -32,6 +32,12 @@ curl http://gn2-zach.genenetwork.org/api/v_pre1/mouse/groups (for just mouse gro
 [ { "DisplayName": "BXD", "FullName": "BXD RI Family", "GeneticType": "riset", "Id": 1, "MappingMethodId": "1", "Name": "BXD", "SpeciesId": 1, "public": 2 }, ... { "DisplayName": "AIL LGSM F34 and F39-43 (GBS)", "FullName": "AIL LGSM F34 and F39-43 (GBS)", "GeneticType": "intercross", "Id": 72, "MappingMethodId": "2", "Name": "AIL-LGSM-F34-F39-43-GBS", "SpeciesId": 1, "public": 2 } ]
 ```
 
+## Fetch Genotypes for Group/RISet ##
+```
+curl http://gn2-zach.genenetwork.org/api/v_pre1/genotypes/BXD
+```
+Returns a CSV file with metadata in the first few rows, sample/strain names as columns, and markers as rows. Currently only works for genotypes we have stored in .geno files; I'll add the option to download BIMBAM files soon.
+
 ## Fetch Datasets ##
 ```
 curl http://gn2-zach.genenetwork.org/api/v_pre1/datasets/bxd
@@ -43,6 +49,13 @@ curl http://gn2-zach.genenetwork.org/api/v_pre1/datasets/mouse/bxd
 ```
 (I added the option to specify species just in case we end up with the same group name across multiple species at some point, though it's currently unnecessary)
 
+## Fetch Sample Data for Dataset ##
+``` 
+curl http://gn2-zach.genenetwork.org/api/v_pre1/sample_data/HSNIH-PalmerPublish.csv
+```
+
+Returns a CSV file with sample/strain names as the columns and trait IDs as rows
+
 ## Fetch Individual Dataset Info ##
 ### For mRNA Assay/"ProbeSet" ###
 
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