From bbc1a53dd0a8a60e8c22f0576be0a2624cb5a3ad Mon Sep 17 00:00:00 2001 From: BonfaceKilz Date: Wed, 30 Sep 2020 17:10:17 +0300 Subject: Apply pep 8 formatting * wqflask/wqflask/correlation/show_corr_results.py [imports]: Apply pep8 and remove unused imports. --- wqflask/wqflask/correlation/show_corr_results.py | 25 ++++++++++++++---------- 1 file changed, 15 insertions(+), 10 deletions(-) diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 91146e5b..8e0aa5df 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -23,25 +23,29 @@ import json import scipy import numpy import rpy2.robjects as ro # R Objects +import utility.logger +import utility.webqtlUtil from rpy2.robjects.packages import importr -utils = importr("utils") from base import data_set -from utility import webqtlUtil, helper_functions, corr_result_helpers, hmac -from db import webqtlDatabaseFunction -import utility.webqtlUtil #this is for parallel computing only. +from utility import helper_functions +from utility import corr_result_helpers +from utility import hmac + from wqflask.correlation import correlation_functions from utility.benchmark import Bench -import utility.webqtlUtil -from utility.type_checking import is_str, get_float, get_int, get_string -from utility.db_tools import escape +from utility.type_checking import is_str +from utility.type_checking import get_float +from utility.type_checking import get_int +from utility.type_checking import get_string +from utility.db_tools import escape -from flask import Flask, g +from flask import g -import utility.logger -logger = utility.logger.getLogger(__name__ ) +utils = importr("utils") +logger = utility.logger.getLogger(__name__) METHOD_LIT = "3" METHOD_TISSUE_PEARSON = "4" @@ -51,6 +55,7 @@ TISSUE_METHODS = [METHOD_TISSUE_PEARSON, METHOD_TISSUE_RANK] TISSUE_MOUSE_DB = 1 + class CorrelationResults(object): def __init__(self, start_vars): # get trait list from db (database name) -- cgit v1.2.3