From 8e4d7024dbdf56625ace33881f30245395d4c18f Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Thu, 10 Jan 2013 14:52:24 -0600
Subject: Made x-axis values into ints; committing before trying to add
 multiple graphs for each chromosome

---
 .../static/new/javascript/marker_regression.coffee      | 17 +++++++++++++----
 .../wqflask/static/new/javascript/marker_regression.js  | 14 +++++++++-----
 2 files changed, 22 insertions(+), 9 deletions(-)

diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.coffee b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
index cb19712f..9f2eb8d7 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.coffee
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
@@ -74,9 +74,14 @@ $ ->
     
     class Manhattan_Plot
         constructor: ->
+            #@chromosomes = {}   # Hash of chromosomes
+            #
+            #@init_chromosomes()
+            
             @process_data()
             @display_graph()
             
+            
         process_data: ->
             qtl_results = js_data.qtl_results
             #console.log("qtl_results: ", qtl_results)
@@ -84,9 +89,10 @@ $ ->
             @max_mb = 0
             for result in qtl_results
                 if result.locus.chromosome == '1'
-                    if parseInt(result.locus.mb) > @max_mb
-                        @max_mb = result.locus.mb
-                    @plot_points.push([result.locus.mb, result.lrs])
+                    mb = parseInt(result.locus.mb)
+                    if mb > @max_mb
+                        @max_mb = mb
+                    @plot_points.push([mb, result.lrs])
                 
         display_graph: ->
             x_axis_max = Math.ceil(@max_mb/25) * 25
@@ -95,6 +101,8 @@ $ ->
             while (x_tick <= x_axis_max)
                 x_axis_ticks.push(x_tick)
                 x_tick += 25
+            console.log("x_axis_ticks:", x_axis_ticks)    
+            console.log("type of x_axis ticks:", typeof(x_axis_ticks[0]), typeof(x_axis_ticks[2]))
             #console.log("@plot_points is:", @plot_points)
             $.jqplot('manhattan_plot',  [@plot_points],
                 title: '1'
@@ -103,7 +111,7 @@ $ ->
                     markerRenderer: $.jqplot.MarkerRenderer
                     markerOptions:
                         style: "filledCircle"
-                        size: 3                   
+                        size: 3
                 axesDefaults:
                     tickRenderer: $.jqplot.CanvasAxisTickRenderer
                     labelRenderer: $.jqplot.CanvasAxisLabelRenderer
@@ -115,6 +123,7 @@ $ ->
                         tickOptions:
                             angle: 90
                             showGridline: false
+                            formatString: '%d' 
                         label: "Megabases"
                     yaxis:
                         min: 0
diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.js b/wqflask/wqflask/static/new/javascript/marker_regression.js
index 30e287dd..c69d0340 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.js
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.js
@@ -80,7 +80,7 @@
       }
 
       Manhattan_Plot.prototype.process_data = function() {
-        var qtl_results, result, _i, _len, _results;
+        var mb, qtl_results, result, _i, _len, _results;
         qtl_results = js_data.qtl_results;
         this.plot_points = [];
         this.max_mb = 0;
@@ -88,10 +88,11 @@
         for (_i = 0, _len = qtl_results.length; _i < _len; _i++) {
           result = qtl_results[_i];
           if (result.locus.chromosome === '1') {
-            if (parseInt(result.locus.mb) > this.max_mb) {
-              this.max_mb = result.locus.mb;
+            mb = parseInt(result.locus.mb);
+            if (mb > this.max_mb) {
+              this.max_mb = mb;
             }
-            _results.push(this.plot_points.push([result.locus.mb, result.lrs]));
+            _results.push(this.plot_points.push([mb, result.lrs]));
           } else {
             _results.push(void 0);
           }
@@ -108,6 +109,8 @@
           x_axis_ticks.push(x_tick);
           x_tick += 25;
         }
+        console.log("x_axis_ticks:", x_axis_ticks);
+        console.log("type of x_axis ticks:", typeof x_axis_ticks[0], typeof x_axis_ticks[2]);
         return $.jqplot('manhattan_plot', [this.plot_points], {
           title: '1',
           seriesDefaults: {
@@ -129,7 +132,8 @@
               ticks: x_axis_ticks,
               tickOptions: {
                 angle: 90,
-                showGridline: false
+                showGridline: false,
+                formatString: '%d'
               },
               label: "Megabases"
             },
-- 
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