From 7705462a70d17f65bf34a158ea76f100b56582c8 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Mon, 8 Feb 2016 11:22:45 +0100
Subject: Guix: installation notes

---
 doc/GUIX-Reproducible-from-source.org | 35 +++++++++++++++++++++++++++++++++++
 doc/README.org                        | 28 ++++++++++++++++++++++++++++
 2 files changed, 63 insertions(+)
 create mode 100644 doc/GUIX-Reproducible-from-source.org
 create mode 100644 doc/README.org

diff --git a/doc/GUIX-Reproducible-from-source.org b/doc/GUIX-Reproducible-from-source.org
new file mode 100644
index 00000000..b88eb9e8
--- /dev/null
+++ b/doc/GUIX-Reproducible-from-source.org
@@ -0,0 +1,35 @@
+#+TITLE: Installing GeneNetwork services with GNU Guix
+
+* Table of Contents                                                     :TOC:
+ - [[#introduction][Introduction]]
+ - [[#binary-deployment][Binary deployment]]
+ - [[#from-source-deployment][From source deployment]]
+
+* Introduction
+
+Large system deployments tend to get very complex. In this document we
+explain the GeneNetwork deployment system which is based on GNU Guix
+(see Pjotr's [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]).
+
+* Binary deployment
+
+NYA (will go to README)
+
+* From source deployment
+
+GNU Guix allows for [[https://github.com/pjotrp/guix-notes/blob/master/REPRODUCIBLE.org][reproducible deployment]] based on a checked out
+Guix repository - use gn-stable for that:
+
+#+begin_src sh   :lang bash
+mkdir genenetwork
+cd genenetwork
+git checkout https://github.com/genenetwork/guix.git gn-stable-guix
+git checkout https://github.com/genenetwork/guix-bioinformatics.git
+#+end_src
+
+Next build guix (and run) following the instructions in [[https://github.com/pjotrp/guix-notes/blob/master/INSTALL.org#building-gnu-guix-from-source-using-guix][guix-notes]].
+
+Once that is done we can add the guix-bioinformatics path with
+
+: env GUIX_PACKAGE_PATH=../guix-bioinformatics ./pre-inst-env guix package -A slurm
+
diff --git a/doc/README.org b/doc/README.org
new file mode 100644
index 00000000..f6ab6a52
--- /dev/null
+++ b/doc/README.org
@@ -0,0 +1,28 @@
+#+TITLE: Installing GeneNetwork services with GNU Guix
+
+* Table of Contents                                                     :TOC:
+ - [[#introduction][Introduction]]
+ - [[#binary-deployment][Binary deployment]]
+ - [[#from-source-deployment][From source deployment]]
+
+* Introduction
+
+Large system deployments tend to get very complex. In this document we
+explain the GeneNetwork deployment system which is based on GNU Guix
+(see Pjotr's [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]).
+
+* Binary deployment
+
+NYA
+
+* From source deployment
+
+GNU Guix allows for [[https://github.com/pjotrp/guix-notes/blob/master/REPRODUCIBLE.org][reproducible deployment]] based on a checked out
+Guix repository - use gn-stable for that:
+
+#+begin_src sh   :lang bash
+mkdir genenetwork
+cd genenetwork
+git checkout https://github.com/genenetwork/guix.git gn-stable-guix
+git checkout https://github.com/genenetwork/guix-bioinformatics.git
+#+end_src
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