From 60a6b72d8f739afaac6a282ea20f713e4fc5487d Mon Sep 17 00:00:00 2001
From: DannyArends
Date: Sat, 19 Sep 2015 13:15:49 +0200
Subject: Adding a todo list to the code, for issue:
 genenetwork/genenetwork2#119

---
 wqflask/wqflask/wgcna/wgcna_analysis.py | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py
index 37a37313..84cdc241 100644
--- a/wqflask/wqflask/wgcna/wgcna_analysis.py
+++ b/wqflask/wqflask/wgcna/wgcna_analysis.py
@@ -54,6 +54,12 @@ class WGCNA(object):
             self.results[t]  = strains
 
         print("Retrieved phenotype data from database")
+        # TODO:
+        # Load data into R
+        # Calculate a good soft threshold
+        # Create block wise modules using WGCNA
+        # How many modules and how many gene per module ?
+        # Show the iconic WCGNA plot of the modules in the hanging tree
 
     def process_results(self, results):
         print("Processing WGCNA output")
-- 
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