From 60447282a0f0063513ab10251945df3ab2c2dbfd Mon Sep 17 00:00:00 2001 From: Alexander Kabui Date: Thu, 26 Nov 2020 00:03:07 +0300 Subject: add reference markdown and github button --- wqflask/wqflask/templates/reference.html | 1541 +----------------------------- 1 file changed, 53 insertions(+), 1488 deletions(-) diff --git a/wqflask/wqflask/templates/reference.html b/wqflask/wqflask/templates/reference.html index d95d22e3..78469d39 100644 --- a/wqflask/wqflask/templates/reference.html +++ b/wqflask/wqflask/templates/reference.html @@ -1,1497 +1,62 @@ {% extends "base.html" %} -{% block title %}References{% endblock %} -{% block content %} - -

 Papers and References to GeneNetwork

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- - - Google Scholar search for "genenetwork" OR "webqtl" generated: -
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  1. 1430 hits on 2016/09/08 -
  2. 1730 hits on 2017/10/17 -
  3. 2020 hits on 2019/05/13) -
- -Google Scholar search for "genenetwork.org" generated: - -
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  1. 1030 hits on 2019/05/13 -
  2. 105 hits from 2018/01/01 to 2019/05/13 -
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- Highlighted References -
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  1. Mulligan MK, Mozhui K, Prins P, Williams RW (2017) GeneNetwork: A Toolbox for Systems Genetics. In Systems Genetics, Methods in Molecular Biology 1488:75-120 -[An updated primer in using GeneNetwork for molecular analysis of mouse and human cohorts.] -PDF version - -
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  2. Williams RW, Williams EG (2017) Resources for Systems Genetics. In Systems Genetics, Methods in Molecular Biology 1488:3-29. -[This review is intended to help you when making the hard choices about types of resources to use in system genetic studies. The short answer: embrace diversity in your resources. The computational barriers to joint analysis are now minimal.] -PDF version - -
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  3. Williams RW (2009) Herding cats: the sociology of data integration. Frontier in Neuroscience 3(2):154-6. -[An short but amusing commentary on predictive (someday perhaps even precision) medicine and how to get there using genetic reference populations such as the BXD and Collaborative Cross families.] -PDF version - -
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  4. -Pinelli M, Carissimo A, Cutillo L, Lai CH, Mutarelli M, Moretti MN, Singh MV, Karali M, Carrella D, Pizzo M, Russo F, Ferrari S, Ponzin D, Angelini C, Banfi S, di Bernardo D (2016) An atlas of gene expression and gene co-regulation in the human retina.Nucleic Acids Res. 2016 Jul 8;44(12):5773-84 -RETINA database, and see the PDF. These data are now in GeneNetwork (Species = Human, Group = Retina). - - -
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  5. -Williams EG, Wu Y, Pooja J, Dubuis S, Blattmann P, Argmann CA, Houten SM, Amariuta T, Wolski W, Zamboni N, Aebersold R, Auwerx J (2016) Systems proteomics and trans-omic integration illuminate new mechanisms in mitochondrial function. Science 352(6291):aad0189 -HTML version, PDF - -
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  6. -Sloan Z, Arends D, Broman KW, Centeno A, Furlotte N, Nijveen H, Yan L, Zhou X, Williams RW, Prins P (2016) GenetNetwork: framework for web-based genetics. The Journal of Open Source Software http://joss.theoj.org/papers/10.21105/joss.00025 (http://dx.doi.org/10.21105/joss.00025) -HTML version - -
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  7. Alam G, Miller DB, O'Callaghan JP, Lu L, Williams RW, Jones BC (2016) MPTP neurotoxicity is highly concordant between the sexes among BXD recombinant inbred mouse strains. Neurotoxicology in press -PDF version - -
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  8. Merkwirth C, Jovaisaite V, Durieux J, Matilainen O, Jordan SD, Quiros PM, Steffen KK, Williams EG, Mouchiroud L, Tronnes SU, Murillo V, Wolff SC, Shaw RJ, Auwerx J, Dillin A (2016) Two conserved histone demethylases regulate mitochondrial stress-induced longevity. Cell 165:1209-1223 -
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  9. Wang X, Pandey AK, Mulligan MK, Williams EG, Mozhui K, Li Z, Jovaisaite V, Quarles LD, Xiao Z, Huang J, Capra JA, Chen Z, Taylor WL, Bastarache L, Niu X, Pollard KS, Ciobanu DC, Reznik AO, Tishkov AV, Zhulin IB, Peng J, Nelson SF, Denny JC, Auwerx J, Lu L, Williams RW (2016). Joint mouse-human phenome-wide association to test gene function and disease risk. Nature Communications 7:10464 -[Best reference on the BXD family of strains and the wide range of phenotypes that have been generated over the past 40 years.] - -PDF version and the - -Supplementary Tables in one Excel file - - -
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  10. Xue Y, Li J, Yan L, Lu L, Liao FF (2015) Genetic variability to diet-induced hippocampal dysfunction in BXD recombinant inbred (RI) mouse strains. Behav Brain Res 292:83-94 -
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  11. Chaum E, Winborn CS, Bhattacharya S (2015) Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population. Mamm Genome 26:210-221 -
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  12. Cheng Q, Seltzer Z, Sima C, Lakschevitz FS, Glogauer M. (2015) Quantitative Trait Loci and Candidate Genes for Neutrophil Recruitment in Sterile Inflammation Mapped in AXB-BXA Recombinant Inbred Mice. PLoS One 10:e0124117 -
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  13. Scott RE, Ghule PN, Stein JL, Stein GS (2015) Cell cycle gene expression networks discovered using systems biology: Significance in carcinogenesis. J Cell Physiol 230:2533-42 -
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  14. Williams EG, Auwerx J (2015) The convergence of systems and reductionist approaches in complex trait analysis. Cell 162:23-32. -
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  15. Wu Y, Williams EG, Dubuis S, Mottis A, Jovaisaite V, Houten SM, Argmann CA, Faridi P, Wolski W, Kutalik Z, Zamboni N, Auwerx J, Aebersold R (2014) Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population. Cell 158:1415-1430 -
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  16. -Hayes SK, Hager R, Grencis RK (2014) Sex-dependent genetics effects on immune responses to parasitic nematodes. BMC Genomics 15:193 -
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  17. Harenza JL, Muldoon PP, De Biasi M, Damaj MI, Miles MF (2014) Genetic variation within the Chrna7 gene modulates nicotine reward-like phenotypes in mice. Genes Brain Behav 13:213-225 -
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  18. -Ye R, Carneiro AM, Airey D, Sanders-Bush E, Williams RW, Lu L, Wang J, Zhang B, Blakely RD (2014) Evaluation of heritable determinants of blood and brain serotonin homeostasis using recombinant inbred mice. Genes Brain Behav. 13:247-260 +{% block css %} + +{% endblock %} -
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  19. -Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G, Williams RW, Auwerx J (2013) Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 497:451-457 PDF version +{% block content %} -
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