From a1c5f1d8bac72c7430740266becfa70191d17314 Mon Sep 17 00:00:00 2001
From: Sam Ockman
Date: Thu, 8 Aug 2013 14:41:40 -0700
Subject: First Selenium test added

---
 webtests/test1.py | 110 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 110 insertions(+)
 create mode 100644 webtests/test1.py

diff --git a/webtests/test1.py b/webtests/test1.py
new file mode 100644
index 00000000..c587e6e3
--- /dev/null
+++ b/webtests/test1.py
@@ -0,0 +1,110 @@
+"""
+Test calculate correlations
+
+>>> test = Test()
+>>> test.get("http://genenetwork.org")
+title: GeneNetwork
+
+Choose the type
+>>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
+
+Enter the Get Any
+>>> test.enter_text('''//*[@id="tfor"]''', 'ssh')
+text: ssh
+
+Search
+>>> test.click('//*[@id="btsearch"]')
+clicked: Search
+
+Choose the first result
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''')
+clicked: 1455854_a_at
+
+A new window is created, so we switch to it
+>>> test.switch_window()
+title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait
+
+Click on Calculate Correlations
+>>> test.click('''//*[@id="title3"]''')
+clicked: Calculate Correlations
+
+Click on Compute
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''')
+clicked: Compute
+
+Another new window
+>>> test.switch_window()
+title: Correlation
+
+Sleep a bunch because this can take a while
+>>> sleep(60)
+
+Ensure the Sample rho is the exepcted 1.000 because it should be the same record
+>>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''')
+text: 1.000
+
+"""
+
+from __future__ import print_function, division, absolute_import
+
+from time import sleep
+
+
+import selenium
+from selenium import webdriver
+from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
+from selenium.webdriver.common.keys import Keys
+
+
+class Test(object):
+    def __init__(self):
+        self.browser = webdriver.Firefox()
+
+    def get(self, url):
+        self.browser.get(url)
+        sleep(5)
+        self.title()
+
+    def click(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        text = el.text.strip() or el.get_attribute("value").strip()
+        el.click()
+        print("clicked:", text)
+        sleep(2)
+
+    def click_option(self, xpath_selector, option_text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        for option in el.find_elements_by_tag_name('option'):
+            if option.text == option_text:
+                option.click() # select() in earlier versions of webdriver
+                break
+        sleep(2)
+
+    def enter_text(self, xpath_selector, text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        sleep(10)
+        el.send_keys(text)
+        sleep(5)
+        # Just in case things get mangled by JavaScript, etc. we print the text for testing
+        self.get_text(xpath_selector)
+
+    def get_text(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        text = el.text.strip() or el.get_attribute("value").strip()
+        print("text:", text)
+
+    def switch_window(self):
+        self.browser.switch_to_window(self.browser.window_handles[-1])
+        sleep(2)
+        self.title()
+        sleep(2)
+
+
+    def title(self):
+        print("title:", self.browser.title)
+
+
+
+if __name__ == '__main__':
+    import doctest
+    doctest.testmod()
-- 
cgit v1.2.3


From eea1c38a9851f31011787b27c14365211a06ea51 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Wed, 14 Aug 2013 17:22:54 -0500
Subject: Committing browser test files

---
 webtests/browser_test.py            |  65 ++++++++++++++++++++
 webtests/chromedriver               | Bin 0 -> 17741222 bytes
 webtests/correlation_matrix_test.py | 118 ++++++++++++++++++++++++++++++++++++
 webtests/correlation_test.py        | 110 +++++++++++++++++++++++++++++++++
 webtests/libpeerconnection.log      |   0
 webtests/marker_regression_test.py  | 117 +++++++++++++++++++++++++++++++++++
 webtests/test1.py                   |   2 +-
 7 files changed, 411 insertions(+), 1 deletion(-)
 create mode 100644 webtests/browser_test.py
 create mode 100755 webtests/chromedriver
 create mode 100644 webtests/correlation_matrix_test.py
 create mode 100644 webtests/correlation_test.py
 create mode 100644 webtests/libpeerconnection.log
 create mode 100644 webtests/marker_regression_test.py

diff --git a/webtests/browser_test.py b/webtests/browser_test.py
new file mode 100644
index 00000000..50e4d128
--- /dev/null
+++ b/webtests/browser_test.py
@@ -0,0 +1,65 @@
+from __future__ import print_function, division, absolute_import
+
+from time import sleep
+
+import selenium
+from selenium import webdriver
+from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
+from selenium.webdriver.common.keys import Keys
+
+class Test(object):
+    def __init__(self):
+        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
+
+    def get(self, url):
+        self.browser.get(url)
+        sleep(5)
+        self.title()
+
+    def click(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        if el.text:
+            text = el.text.strip()
+        elif el.get_attribute("value"):
+            text = el.get_attribute("value").strip()
+        else:
+            text = "Notext"
+        el.click()
+        print("clicked:", text)
+        sleep(2)
+
+    def click_option(self, xpath_selector, option_text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        for option in el.find_elements_by_tag_name('option'):
+            if option.text == option_text:
+                option.click() # select() in earlier versions of webdriver
+                break
+        sleep(2)
+
+    def enter_text(self, xpath_selector, text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        sleep(10)
+        el.send_keys(text)
+        sleep(5)
+        # Just in case things get mangled by JavaScript, etc. we print the text for testing
+        self.get_text(xpath_selector)
+
+    def get_text(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        text = el.text.strip() or el.get_attribute("value").strip()
+        print("text:", text)
+
+    def switch_window(self):
+        self.browser.switch_to_window(self.browser.window_handles[-1])
+        sleep(2)
+        self.title()
+        sleep(2)
+
+
+    def title(self):
+        print("title:", self.browser.title)
+
+
+#if __name__ == '__main__':
+#    import doctest
+#    doctest.testmod()
\ No newline at end of file
diff --git a/webtests/chromedriver b/webtests/chromedriver
new file mode 100755
index 00000000..754eb668
Binary files /dev/null and b/webtests/chromedriver differ
diff --git a/webtests/correlation_matrix_test.py b/webtests/correlation_matrix_test.py
new file mode 100644
index 00000000..21051fd7
--- /dev/null
+++ b/webtests/correlation_matrix_test.py
@@ -0,0 +1,118 @@
+"""
+
+Test Correlation matrix
+
+>>> test = Test()
+>>> test.get("http://genenetwork.org/")
+title: GeneNetwork
+
+Choose the type
+>>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
+
+Enter the Get Any
+>>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
+text: grin2b
+
+Search
+>>> test.click('//*[@id="btsearch"]')
+
+Select the first 4 records
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td/input''')
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td/input''')
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[4]/td/input''')
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[5]/td/input''')
+
+>>> sleep(5)
+
+Add to collection page
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[1]/td/table/tbody/tr[1]/td[4]/a''')
+
+>>> sleep(5)
+
+A new window is created, so we switch to it
+>>> test.switch_window()
+title: BXD Trait Collection
+
+Select all records
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr/td/a/img''')
+
+
+Click Matrix
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr[2]/td/table/tbody/tr/td[2]/a/img''')
+
+Another new window
+>>> test.switch_window()
+title: Correlation Matrix
+
+Sleep a bunch because this can take a while
+>>> sleep(10)
+
+Ensure that the correlation between Trait3 (HC_M2_0606_P::1457003_at) and Trait4 (HC_M2_0606_P::1422223_at) is 0.608
+>>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/blockquote/table/tbody/tr[5]/td[5]/a/font''')
+text: 0.608\n71
+
+"""
+
+from __future__ import print_function, division, absolute_import
+
+from time import sleep
+
+import selenium
+from selenium import webdriver
+from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
+from selenium.webdriver.common.keys import Keys
+
+from browser_test import Test
+#
+#class Test(object):
+#    def __init__(self):
+#        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
+#
+#    def get(self, url):
+#        self.browser.get(url)
+#        sleep(5)
+#        self.title()
+#
+#    def click(self, xpath_selector):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        #text = el.text.strip() or el.get_attribute("value").strip()
+#        el.click()
+#        #print("clicked:", text)
+#        sleep(2)
+#
+#    def click_option(self, xpath_selector, option_text):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        for option in el.find_elements_by_tag_name('option'):
+#            if option.text == option_text:
+#                option.click() # select() in earlier versions of webdriver
+#                break
+#        sleep(2)
+#
+#    def enter_text(self, xpath_selector, text):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        sleep(10)
+#        el.send_keys(text)
+#        sleep(5)
+#        # Just in case things get mangled by JavaScript, etc. we print the text for testing
+#        self.get_text(xpath_selector)
+#
+#    def get_text(self, xpath_selector):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        text = el.text.strip() or el.get_attribute("value").strip()
+#        print("text:", text)
+#
+#    def switch_window(self):
+#        self.browser.switch_to_window(self.browser.window_handles[-1])
+#        sleep(2)
+#        self.title()
+#        sleep(2)
+#
+#
+#    def title(self):
+#        print("title:", self.browser.title)
+#
+#
+#
+if __name__ == '__main__':
+    import doctest
+    doctest.testmod()
diff --git a/webtests/correlation_test.py b/webtests/correlation_test.py
new file mode 100644
index 00000000..aaf3f7df
--- /dev/null
+++ b/webtests/correlation_test.py
@@ -0,0 +1,110 @@
+"""
+Test calculate correlations
+
+>>> test = Test()
+>>> test.get("http://genenetwork.org")
+title: GeneNetwork
+
+Choose the type
+>>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
+
+Enter the Get Any
+>>> test.enter_text('''//*[@id="tfor"]''', 'ssh')
+text: ssh
+
+Search
+>>> test.click('//*[@id="btsearch"]')
+clicked: Search
+
+Choose the first result
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''')
+clicked: 1455854_a_at
+
+A new window is created, so we switch to it
+>>> test.switch_window()
+title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait
+
+Click on Calculate Correlations
+>>> test.click('''//*[@id="title3"]''')
+clicked: Calculate Correlations
+
+Click on Compute
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''')
+clicked: Compute
+
+Another new window
+>>> test.switch_window()
+title: Correlation
+
+Sleep a bunch because this can take a while
+>>> sleep(60)
+
+Ensure the Sample rho is the exepcted 1.000 because it should be the same record
+>>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''')
+text: 1.000
+
+"""
+
+from __future__ import print_function, division, absolute_import
+
+from time import sleep
+
+
+import selenium
+from selenium import webdriver
+from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
+from selenium.webdriver.common.keys import Keys
+
+
+class Test(object):
+    def __init__(self):
+        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
+
+    def get(self, url):
+        self.browser.get(url)
+        sleep(5)
+        self.title()
+
+    def click(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        text = el.text.strip() or el.get_attribute("value").strip()
+        el.click()
+        print("clicked:", text)
+        sleep(2)
+
+    def click_option(self, xpath_selector, option_text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        for option in el.find_elements_by_tag_name('option'):
+            if option.text == option_text:
+                option.click() # select() in earlier versions of webdriver
+                break
+        sleep(2)
+
+    def enter_text(self, xpath_selector, text):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        sleep(10)
+        el.send_keys(text)
+        sleep(5)
+        # Just in case things get mangled by JavaScript, etc. we print the text for testing
+        self.get_text(xpath_selector)
+
+    def get_text(self, xpath_selector):
+        el = self.browser.find_element_by_xpath(xpath_selector)
+        text = el.text.strip() or el.get_attribute("value").strip()
+        print("text:", text)
+
+    def switch_window(self):
+        self.browser.switch_to_window(self.browser.window_handles[-1])
+        sleep(2)
+        self.title()
+        sleep(2)
+
+
+    def title(self):
+        print("title:", self.browser.title)
+
+
+
+if __name__ == '__main__':
+    import doctest
+    doctest.testmod()
diff --git a/webtests/libpeerconnection.log b/webtests/libpeerconnection.log
new file mode 100644
index 00000000..e69de29b
diff --git a/webtests/marker_regression_test.py b/webtests/marker_regression_test.py
new file mode 100644
index 00000000..3baf1e95
--- /dev/null
+++ b/webtests/marker_regression_test.py
@@ -0,0 +1,117 @@
+"""
+Test calculate correlations
+
+>>> test = Test()
+>>> test.get("http://genenetwork.org")
+title: GeneNetwork
+
+Choose the type
+>>> test.click_option('''//*[@id="tissue"]''', 'Liver mRNA')
+
+Enter the Get Any
+>>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
+text: grin2b
+
+Search
+>>> test.click('//*[@id="btsearch"]')
+clicked: Search
+
+Choose the second result
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td[2]/a''')
+clicked: 1431700_at_A
+
+A new window is created, so we switch to it
+>>> test.switch_window()
+title: GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA : 1431700_at_A: Display Trait
+
+Click on Mapping Tools
+>>> test.click('''//*[@id="title4"]''')
+clicked: Mapping Tools
+
+Click on Marker Regression tab
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[8]/table/tbody/tr/td/div/ul/li[2]/a''')
+clicked: Marker Regression
+
+Click on Compute
+>>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[8]/table/tbody/tr/td/div/div[2]/span/table/tbody/tr/td/input''')
+clicked: Compute
+
+Another new window
+>>> test.switch_window()
+title: Genome Association Result
+
+Sleep a bunch because this can take a while
+>>> sleep(60)
+
+Ensure that the LRS of the top record is the exepcted value
+>>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr[4]/td/table/tbody/tr/td/div/table/tbody/tr[2]/td[2]''')
+text: 11.511
+
+"""
+
+from __future__ import print_function, division, absolute_import
+
+from browser_test import Test
+
+#
+#from time import sleep
+#
+#
+#import selenium
+#from selenium import webdriver
+#from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
+#from selenium.webdriver.common.keys import Keys
+#
+#
+#class Test(object):
+#    def __init__(self):
+#        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
+#
+#    def get(self, url):
+#        self.browser.get(url)
+#        sleep(5)
+#        self.title()
+#
+#    def click(self, xpath_selector):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        text = el.text.strip() or el.get_attribute("value").strip()
+#        el.click()
+#        print("clicked:", text)
+#        sleep(2)
+#
+#    def click_option(self, xpath_selector, option_text):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        for option in el.find_elements_by_tag_name('option'):
+#            if option.text == option_text:
+#                option.click() # select() in earlier versions of webdriver
+#                break
+#        sleep(2)
+#
+#    def enter_text(self, xpath_selector, text):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        sleep(10)
+#        el.send_keys(text)
+#        sleep(5)
+#        # Just in case things get mangled by JavaScript, etc. we print the text for testing
+#        self.get_text(xpath_selector)
+#
+#    def get_text(self, xpath_selector):
+#        el = self.browser.find_element_by_xpath(xpath_selector)
+#        text = el.text.strip() or el.get_attribute("value").strip()
+#        print("text:", text)
+#
+#    def switch_window(self):
+#        self.browser.switch_to_window(self.browser.window_handles[-1])
+#        sleep(2)
+#        self.title()
+#        sleep(2)
+#
+#
+#    def title(self):
+#        print("title:", self.browser.title)
+
+
+
+if __name__ == '__main__':
+    import doctest
+    doctest.testmod()
diff --git a/webtests/test1.py b/webtests/test1.py
index c587e6e3..aaf3f7df 100644
--- a/webtests/test1.py
+++ b/webtests/test1.py
@@ -58,7 +58,7 @@ from selenium.webdriver.common.keys import Keys
 
 class Test(object):
     def __init__(self):
-        self.browser = webdriver.Firefox()
+        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
 
     def get(self, url):
         self.browser.get(url)
-- 
cgit v1.2.3


From e327f27b1957ee6693986e9e9d4ff77550b16f07 Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Wed, 14 Aug 2013 17:30:53 -0500
Subject: Removed some duplicate files in the maintenance folder

---
 webtests/test1.py                              | 110 -----------------------
 wqflask/maintenance/browser_test.py            |  60 -------------
 wqflask/maintenance/correlation_matrix_test.py | 117 ------------------------
 wqflask/maintenance/correlation_test.py        | 110 -----------------------
 wqflask/maintenance/marker_regression_test.py  | 118 -------------------------
 5 files changed, 515 deletions(-)
 delete mode 100644 webtests/test1.py
 delete mode 100644 wqflask/maintenance/browser_test.py
 delete mode 100644 wqflask/maintenance/correlation_matrix_test.py
 delete mode 100644 wqflask/maintenance/correlation_test.py
 delete mode 100644 wqflask/maintenance/marker_regression_test.py

diff --git a/webtests/test1.py b/webtests/test1.py
deleted file mode 100644
index aaf3f7df..00000000
--- a/webtests/test1.py
+++ /dev/null
@@ -1,110 +0,0 @@
-"""
-Test calculate correlations
-
->>> test = Test()
->>> test.get("http://genenetwork.org")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'ssh')
-text: ssh
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the first result
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''')
-clicked: 1455854_a_at
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait
-
-Click on Calculate Correlations
->>> test.click('''//*[@id="title3"]''')
-clicked: Calculate Correlations
-
-Click on Compute
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''')
-clicked: Compute
-
-Another new window
->>> test.switch_window()
-title: Correlation
-
-Sleep a bunch because this can take a while
->>> sleep(60)
-
-Ensure the Sample rho is the exepcted 1.000 because it should be the same record
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''')
-text: 1.000
-
-"""
-
-from __future__ import print_function, division, absolute_import
-
-from time import sleep
-
-
-import selenium
-from selenium import webdriver
-from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-from selenium.webdriver.common.keys import Keys
-
-
-class Test(object):
-    def __init__(self):
-        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
-
-    def get(self, url):
-        self.browser.get(url)
-        sleep(5)
-        self.title()
-
-    def click(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        el.click()
-        print("clicked:", text)
-        sleep(2)
-
-    def click_option(self, xpath_selector, option_text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        for option in el.find_elements_by_tag_name('option'):
-            if option.text == option_text:
-                option.click() # select() in earlier versions of webdriver
-                break
-        sleep(2)
-
-    def enter_text(self, xpath_selector, text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        sleep(10)
-        el.send_keys(text)
-        sleep(5)
-        # Just in case things get mangled by JavaScript, etc. we print the text for testing
-        self.get_text(xpath_selector)
-
-    def get_text(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        print("text:", text)
-
-    def switch_window(self):
-        self.browser.switch_to_window(self.browser.window_handles[-1])
-        sleep(2)
-        self.title()
-        sleep(2)
-
-
-    def title(self):
-        print("title:", self.browser.title)
-
-
-
-if __name__ == '__main__':
-    import doctest
-    doctest.testmod()
diff --git a/wqflask/maintenance/browser_test.py b/wqflask/maintenance/browser_test.py
deleted file mode 100644
index ecf8e1ca..00000000
--- a/wqflask/maintenance/browser_test.py
+++ /dev/null
@@ -1,60 +0,0 @@
-from __future__ import print_function, division, absolute_import
-
-from time import sleep
-
-import selenium
-from selenium import webdriver
-from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-from selenium.webdriver.common.keys import Keys
-
-class Test(object):
-    def __init__(self):
-        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
-
-    def get(self, url):
-        self.browser.get(url)
-        sleep(5)
-        self.title()
-
-    def click(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        el.click()
-        print("clicked:", text)
-        sleep(2)
-
-    def click_option(self, xpath_selector, option_text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        for option in el.find_elements_by_tag_name('option'):
-            if option.text == option_text:
-                option.click() # select() in earlier versions of webdriver
-                break
-        sleep(2)
-
-    def enter_text(self, xpath_selector, text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        sleep(10)
-        el.send_keys(text)
-        sleep(5)
-        # Just in case things get mangled by JavaScript, etc. we print the text for testing
-        self.get_text(xpath_selector)
-
-    def get_text(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        print("text:", text)
-
-    def switch_window(self):
-        self.browser.switch_to_window(self.browser.window_handles[-1])
-        sleep(2)
-        self.title()
-        sleep(2)
-
-
-    def title(self):
-        print("title:", self.browser.title)
-
-
-#if __name__ == '__main__':
-#    import doctest
-#    doctest.testmod()
\ No newline at end of file
diff --git a/wqflask/maintenance/correlation_matrix_test.py b/wqflask/maintenance/correlation_matrix_test.py
deleted file mode 100644
index 2983a76b..00000000
--- a/wqflask/maintenance/correlation_matrix_test.py
+++ /dev/null
@@ -1,117 +0,0 @@
-"""
-
-Test Correlation matrix
-
->>> test = Test()
->>> test.get("http://genenetwork.org/")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
-text: grin2b
-
-Search
->>> test.click('//*[@id="btsearch"]')
-
-Select the first 4 records
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td/input''')
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td/input''')
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[4]/td/input''')
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[5]/td/input''')
-
->>> sleep(5)
-
-Add to collection page
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[1]/td/table/tbody/tr[1]/td[4]/a''')
-
->>> sleep(5)
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: BXD Trait Collection
-
-Select all records
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr/td/a/img''')
-
-Click Matrix
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr[2]/td/table/tbody/tr/td[2]/a/img''')
-
-Another new window
->>> test.switch_window()
-title: Correlation Matrix
-
-Sleep a bunch because this can take a while
->>> sleep(10)
-
-Ensure that the correlation between Trait3 (HC_M2_0606_P::1457003_at) and Trait4 (HC_M2_0606_P::1422223_at) is 0.608
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/blockquote/table/tbody/tr[5]/td[5]/a/font''')
-text: 0.608
-
-"""
-
-from __future__ import print_function, division, absolute_import
-
-from time import sleep
-
-import selenium
-from selenium import webdriver
-from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-from selenium.webdriver.common.keys import Keys
-
-from browser_test import Test
-#
-#class Test(object):
-#    def __init__(self):
-#        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
-#
-#    def get(self, url):
-#        self.browser.get(url)
-#        sleep(5)
-#        self.title()
-#
-#    def click(self, xpath_selector):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        #text = el.text.strip() or el.get_attribute("value").strip()
-#        el.click()
-#        #print("clicked:", text)
-#        sleep(2)
-#
-#    def click_option(self, xpath_selector, option_text):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        for option in el.find_elements_by_tag_name('option'):
-#            if option.text == option_text:
-#                option.click() # select() in earlier versions of webdriver
-#                break
-#        sleep(2)
-#
-#    def enter_text(self, xpath_selector, text):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        sleep(10)
-#        el.send_keys(text)
-#        sleep(5)
-#        # Just in case things get mangled by JavaScript, etc. we print the text for testing
-#        self.get_text(xpath_selector)
-#
-#    def get_text(self, xpath_selector):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        text = el.text.strip() or el.get_attribute("value").strip()
-#        print("text:", text)
-#
-#    def switch_window(self):
-#        self.browser.switch_to_window(self.browser.window_handles[-1])
-#        sleep(2)
-#        self.title()
-#        sleep(2)
-#
-#
-#    def title(self):
-#        print("title:", self.browser.title)
-#
-#
-#
-if __name__ == '__main__':
-    import doctest
-    doctest.testmod()
diff --git a/wqflask/maintenance/correlation_test.py b/wqflask/maintenance/correlation_test.py
deleted file mode 100644
index aaf3f7df..00000000
--- a/wqflask/maintenance/correlation_test.py
+++ /dev/null
@@ -1,110 +0,0 @@
-"""
-Test calculate correlations
-
->>> test = Test()
->>> test.get("http://genenetwork.org")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'ssh')
-text: ssh
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the first result
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''')
-clicked: 1455854_a_at
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait
-
-Click on Calculate Correlations
->>> test.click('''//*[@id="title3"]''')
-clicked: Calculate Correlations
-
-Click on Compute
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''')
-clicked: Compute
-
-Another new window
->>> test.switch_window()
-title: Correlation
-
-Sleep a bunch because this can take a while
->>> sleep(60)
-
-Ensure the Sample rho is the exepcted 1.000 because it should be the same record
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''')
-text: 1.000
-
-"""
-
-from __future__ import print_function, division, absolute_import
-
-from time import sleep
-
-
-import selenium
-from selenium import webdriver
-from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-from selenium.webdriver.common.keys import Keys
-
-
-class Test(object):
-    def __init__(self):
-        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
-
-    def get(self, url):
-        self.browser.get(url)
-        sleep(5)
-        self.title()
-
-    def click(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        el.click()
-        print("clicked:", text)
-        sleep(2)
-
-    def click_option(self, xpath_selector, option_text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        for option in el.find_elements_by_tag_name('option'):
-            if option.text == option_text:
-                option.click() # select() in earlier versions of webdriver
-                break
-        sleep(2)
-
-    def enter_text(self, xpath_selector, text):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        sleep(10)
-        el.send_keys(text)
-        sleep(5)
-        # Just in case things get mangled by JavaScript, etc. we print the text for testing
-        self.get_text(xpath_selector)
-
-    def get_text(self, xpath_selector):
-        el = self.browser.find_element_by_xpath(xpath_selector)
-        text = el.text.strip() or el.get_attribute("value").strip()
-        print("text:", text)
-
-    def switch_window(self):
-        self.browser.switch_to_window(self.browser.window_handles[-1])
-        sleep(2)
-        self.title()
-        sleep(2)
-
-
-    def title(self):
-        print("title:", self.browser.title)
-
-
-
-if __name__ == '__main__':
-    import doctest
-    doctest.testmod()
diff --git a/wqflask/maintenance/marker_regression_test.py b/wqflask/maintenance/marker_regression_test.py
deleted file mode 100644
index f4840bd7..00000000
--- a/wqflask/maintenance/marker_regression_test.py
+++ /dev/null
@@ -1,118 +0,0 @@
-"""
-Test calculate correlations
-
->>> test = Test()
->>> test.get("http://genenetwork.org")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Liver mRNA')
-clicked: Liver mRNA
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
-text: grin2b
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the second result
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td[2]/a''')
-clicked: 1431700_at_A
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA : 1431700_at_A: Display Trait
-
-Click on Mapping Tools
->>> test.click('''//*[@id="title4"]''')
-clicked: Mapping Tools
-
-Click on Marker Regression tab
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[8]/table/tbody/tr/td/div/ul/li[2]/a''')
-clicked: Marker Regression
-
-Click on Compute
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[8]/table/tbody/tr/td/div/div[2]/span/table/tbody/tr/td/input''')
-clicked: Compute
-
-Another new window
->>> test.switch_window()
-title: Genome Association Result
-
-Sleep a bunch because this can take a while
->>> sleep(60)
-
-Ensure that the LRS of the top record is the exepcted value
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr[4]/td/table/tbody/tr/td/div/table/tbody/tr[2]/td[2]''')
-text: 11.511
-
-"""
-
-from __future__ import print_function, division, absolute_import
-
-from browser_test import Test
-
-#
-#from time import sleep
-#
-#
-#import selenium
-#from selenium import webdriver
-#from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-#from selenium.webdriver.common.keys import Keys
-#
-#
-#class Test(object):
-#    def __init__(self):
-#        self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
-#
-#    def get(self, url):
-#        self.browser.get(url)
-#        sleep(5)
-#        self.title()
-#
-#    def click(self, xpath_selector):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        text = el.text.strip() or el.get_attribute("value").strip()
-#        el.click()
-#        print("clicked:", text)
-#        sleep(2)
-#
-#    def click_option(self, xpath_selector, option_text):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        for option in el.find_elements_by_tag_name('option'):
-#            if option.text == option_text:
-#                option.click() # select() in earlier versions of webdriver
-#                break
-#        sleep(2)
-#
-#    def enter_text(self, xpath_selector, text):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        sleep(10)
-#        el.send_keys(text)
-#        sleep(5)
-#        # Just in case things get mangled by JavaScript, etc. we print the text for testing
-#        self.get_text(xpath_selector)
-#
-#    def get_text(self, xpath_selector):
-#        el = self.browser.find_element_by_xpath(xpath_selector)
-#        text = el.text.strip() or el.get_attribute("value").strip()
-#        print("text:", text)
-#
-#    def switch_window(self):
-#        self.browser.switch_to_window(self.browser.window_handles[-1])
-#        sleep(2)
-#        self.title()
-#        sleep(2)
-#
-#
-#    def title(self):
-#        print("title:", self.browser.title)
-
-
-
-if __name__ == '__main__':
-    import doctest
-    doctest.testmod()
-- 
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