From 467502356717c50b6cb3311facca501217092a6f Mon Sep 17 00:00:00 2001
From: Zachary Sloan
Date: Wed, 27 Nov 2013 23:21:51 +0000
Subject: Clicking a trait in "color by trait" now gets all of its sample
 values that will be used to color the bar graph

---
 wqflask/base/trait.py                              | 25 +++++++++++++-
 .../javascript/get_traits_from_collection.coffee   | 39 ++++++++++++++--------
 .../new/javascript/get_traits_from_collection.js   | 39 ++++++++++++++++------
 3 files changed, 77 insertions(+), 26 deletions(-)

diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 9e4f0944..712d9af5 100755
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -12,10 +12,13 @@ from base.data_set import create_dataset
 from dbFunction import webqtlDatabaseFunction
 from utility import webqtlUtil
 
+from wqflask import app
+
+import simplejson as json
 from MySQLdb import escape_string as escape
 from pprint import pformat as pf
 
-from flask import Flask, g
+from flask import Flask, g, request
 
 def print_mem(stage=""):
     mem = resource.getrusage(resource.RUSAGE_SELF).ru_maxrss
@@ -70,6 +73,7 @@ class GeneralTrait(object):
         
         Actual turning into json doesn't happen here though"""
         return dict(name=self.name,
+                    dataset=self.dataset.name,
                     description=self.description_display,
                     mean=self.mean)
 
@@ -626,3 +630,22 @@ class GeneralTrait(object):
                 ZValue = 0.5*log((1.0+self.correlation)/(1.0-self.correlation))
                 ZValue = ZValue*sqrt(self.overlap-3)
                 self.p_value = 2.0*(1.0 - reaper.normp(abs(ZValue)))
+
+
+
+@app.route("/trait/get_sample_data")
+def get_sample_data():
+    params = request.args
+    trait = params['trait']
+    dataset = params['dataset']
+    
+    trait_ob = GeneralTrait(name=trait, dataset_name=dataset)
+    
+    return json.dumps({key: value.value for key, value in trait_ob.data.iteritems() })
+    
+    #jsonable_sample_data = {}
+    #for sample in trait_ob.data.iteritems():
+    #    jsonable_sample_data[sample] = trait_ob.data[sample].value
+    #
+    #return jsonable_sample_data
+    
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/get_traits_from_collection.coffee b/wqflask/wqflask/static/new/javascript/get_traits_from_collection.coffee
index c178d60d..f1d41cbe 100644
--- a/wqflask/wqflask/static/new/javascript/get_traits_from_collection.coffee
+++ b/wqflask/wqflask/static/new/javascript/get_traits_from_collection.coffee
@@ -1,50 +1,60 @@
 
 console.log("before get_traits_from_collection")
 
+# Going to be used to hold collection list
+# So we can repopulate it when the back button is clicked
+collection_list = null
 
 collection_click = () ->
     console.log("Clicking on:", $(this))
     this_collection_url = $(this).find('.collection_name').prop("href")
     this_collection_url += "&json"
     console.log("this_collection_url", this_collection_url)
+    collection_list = $("#collections_holder").html()
     $.ajax(
         dataType: "json",
         url: this_collection_url,
         success: process_traits
       )
+    
+trait_click = () ->
+    console.log("Clicking on:", $(this))
+    trait = $(this).find('.trait').text()
+    dataset = $(this).find('.dataset').text()
+    this_trait_url = "/trait/get_sample_data?trait="+trait+"&dataset="+dataset
+    console.log("this_trait_url", this_trait_url)
+    $.ajax(
+        dataType: "json",
+        url: this_trait_url,
+        success: color_by_trait
+      )
 
-# Going to be used to hold collection list
-# So we can repopulate it when the back button is clicked
-collection_list = null
+color_by_trait =  (trait_sample_data, textStatus, jqXHR) ->
+    console.log('in color_by_trait:', trait_sample_data)
 
 process_traits = (trait_data, textStatus, jqXHR) ->
     console.log('in process_traits with trait_data:', trait_data)
     
-    the_html = "<div id='collections_holder'>"
-    
-    the_html += "<button id='back_to_collections' class='btn btn-inverse btn-small'>"
+    the_html = "<button id='back_to_collections' class='btn btn-inverse btn-small'>"
     the_html += "<i class='icon-white icon-arrow-left'></i> Back </button>"
     
     the_html += "<table class='table table-hover'>"
-    the_html += "<thead><tr><th>Record</th><th>Description</th><th>Mean</th></tr></thead>"
+    the_html += "<thead><tr><th>Record</th><th>Data Set</th><th>Description</th><th>Mean</th></tr></thead>"
     the_html += "<tbody>"
     for trait in trait_data
-        the_html += "<tr><td>#{ trait.name }</td>"
+        the_html += "<tr class='trait_line'><td class='trait'>#{ trait.name }</td>"
+        the_html += "<td class='dataset'>#{ trait.dataset }</td>"
         the_html += "<td>#{ trait.description }</td>"
         the_html += "<td>#{ trait.mean or '&nbsp;' }</td></tr>"
     the_html += "</tbody>"
     the_html += "</table>"
-    the_html += "</div>"
 
-    collection_list = $("#collections_holder").html()
-    $("#collections_holder").replaceWith(the_html)
+    $("#collections_holder").html(the_html)
     $('#collections_holder').colorbox.resize()
 
 back_to_collections = () ->
     console.log("collection_list:", collection_list)
-    $("#collections_holder").replaceWith(collection_list)
-    
-    $("#trait_table").wrap("<div id='collections_holder'></div>")
+    $("#collections_holder").html(collection_list)
     
     $(document).on("click", ".collection_line", collection_click)
     $('#collections_holder').colorbox.resize()
@@ -53,4 +63,5 @@ $ ->
     console.log("inside get_traits_from_collection")
     
     $(document).on("click", ".collection_line", collection_click)
+    $(document).on("click", ".trait_line", trait_click)
     $(document).on("click", "#back_to_collections", back_to_collections)
diff --git a/wqflask/wqflask/static/new/javascript/get_traits_from_collection.js b/wqflask/wqflask/static/new/javascript/get_traits_from_collection.js
index c0fb7c54..104c411d 100644
--- a/wqflask/wqflask/static/new/javascript/get_traits_from_collection.js
+++ b/wqflask/wqflask/static/new/javascript/get_traits_from_collection.js
@@ -1,15 +1,18 @@
 // Generated by CoffeeScript 1.6.1
 (function() {
-  var back_to_collections, collection_click, collection_list, process_traits;
+  var back_to_collections, collection_click, collection_list, color_by_trait, process_traits, trait_click;
 
   console.log("before get_traits_from_collection");
 
+  collection_list = null;
+
   collection_click = function() {
     var this_collection_url;
     console.log("Clicking on:", $(this));
     this_collection_url = $(this).find('.collection_name').prop("href");
     this_collection_url += "&json";
     console.log("this_collection_url", this_collection_url);
+    collection_list = $("#collections_holder").html();
     return $.ajax({
       dataType: "json",
       url: this_collection_url,
@@ -17,35 +20,48 @@
     });
   };
 
-  collection_list = null;
+  trait_click = function() {
+    var dataset, this_trait_url, trait;
+    console.log("Clicking on:", $(this));
+    trait = $(this).find('.trait').text();
+    dataset = $(this).find('.dataset').text();
+    this_trait_url = "/trait/get_sample_data?trait=" + trait + "&dataset=" + dataset;
+    console.log("this_trait_url", this_trait_url);
+    return $.ajax({
+      dataType: "json",
+      url: this_trait_url,
+      success: color_by_trait
+    });
+  };
+
+  color_by_trait = function(trait_sample_data, textStatus, jqXHR) {
+    return console.log('in color_by_trait:', trait_sample_data);
+  };
 
   process_traits = function(trait_data, textStatus, jqXHR) {
     var the_html, trait, _i, _len;
     console.log('in process_traits with trait_data:', trait_data);
-    the_html = "<div id='collections_holder'>";
-    the_html += "<button id='back_to_collections' class='btn btn-inverse btn-small'>";
+    the_html = "<button id='back_to_collections' class='btn btn-inverse btn-small'>";
     the_html += "<i class='icon-white icon-arrow-left'></i> Back </button>";
     the_html += "<table class='table table-hover'>";
-    the_html += "<thead><tr><th>Record</th><th>Description</th><th>Mean</th></tr></thead>";
+    the_html += "<thead><tr><th>Record</th><th>Data Set</th><th>Description</th><th>Mean</th></tr></thead>";
     the_html += "<tbody>";
     for (_i = 0, _len = trait_data.length; _i < _len; _i++) {
       trait = trait_data[_i];
-      the_html += "<tr><td>" + trait.name + "</td>";
+      the_html += "<tr class='trait_line'><td class='trait'>" + trait.name + "</td>";
+      the_html += "<td class='dataset'>" + trait.dataset + "</td>";
       the_html += "<td>" + trait.description + "</td>";
       the_html += "<td>" + (trait.mean || '&nbsp;') + "</td></tr>";
     }
     the_html += "</tbody>";
     the_html += "</table>";
-    the_html += "</div>";
-    collection_list = $("#collections_holder").html();
-    $("#collections_holder").replaceWith(the_html);
+    $("#collections_holder").html(the_html);
     return $('#collections_holder').colorbox.resize();
   };
 
   back_to_collections = function() {
     console.log("collection_list:", collection_list);
-    $("#collections_holder").replaceWith(collection_list);
-    $("#trait_table").wrap("<div id='collections_holder'></div>");
+    $("#collections_holder").html(collection_list);
     $(document).on("click", ".collection_line", collection_click);
     return $('#collections_holder').colorbox.resize();
   };
@@ -53,6 +69,7 @@
   $(function() {
     console.log("inside get_traits_from_collection");
     $(document).on("click", ".collection_line", collection_click);
+    $(document).on("click", ".trait_line", trait_click);
     return $(document).on("click", "#back_to_collections", back_to_collections);
   });
 
-- 
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