From 36d2cbc96bd5219e044ce1728f750ceefd0fa5f6 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 6 Apr 2022 19:10:20 +0000
Subject: Changed some styling for the edit_phenotype template

---
 .../wqflask/static/new/css/bootstrap-custom.css    |   4 +
 wqflask/wqflask/templates/edit_phenotype.html      | 401 +++++++++++----------
 2 files changed, 205 insertions(+), 200 deletions(-)

diff --git a/wqflask/wqflask/static/new/css/bootstrap-custom.css b/wqflask/wqflask/static/new/css/bootstrap-custom.css
index a0d3ff6a..007dcc44 100644
--- a/wqflask/wqflask/static/new/css/bootstrap-custom.css
+++ b/wqflask/wqflask/static/new/css/bootstrap-custom.css
@@ -3349,6 +3349,10 @@ select[multiple].form-group-lg .form-control {
     text-align: right;
 }
 
+.form-horizontal .control-label.text-left{
+    text-align: left;
+}
+
 .form-horizontal .has-feedback .form-control-feedback {
     right: 15px;
 }
diff --git a/wqflask/wqflask/templates/edit_phenotype.html b/wqflask/wqflask/templates/edit_phenotype.html
index 5458247e..af6fcd98 100644
--- a/wqflask/wqflask/templates/edit_phenotype.html
+++ b/wqflask/wqflask/templates/edit_phenotype.html
@@ -11,232 +11,233 @@
 {% endfor %}
 {% endif %}
 {% endwith %}
-<div class="page-header text-center">
-    <h1>Edit Trait for Published Database</h1>
-</div>
+<div class="container">
+    <div class="page-header text-left">
+        <h1>Trait Metadata and Data Editing Form</h1>
+    </div>
 
-{% if diff %}
+    {% if diff %}
 
-<div class="container">
-    <details class="col-sm-12 col-md-10 col-lg-12">
-    <summary>
-        <h2>Update History</h2>
-    </summary>
-    <table class="table">
-    <tbody>
-        <tr>
-            <th>Timestamp</th>
-            <th>Editor</th>
-            <th>Field</th>
-            <th>Diff</th>
-        </tr>
-        {% set ns = namespace(display_cell=True) %}
+    <div class="container text-left">
+        <details class="col-md-12 col-lg-20 col-lg-22">
+        <summary>
+            <h2>Update History</h2>
+        </summary>
+        <table class="table">
+        <tbody>
+            <tr>
+                <th>Timestamp</th>
+                <th>Editor</th>
+                <th>Field</th>
+                <th>Diff</th>
+            </tr>
+            {% set ns = namespace(display_cell=True) %}
 
-        {% for timestamp, group in diff %}
-        {% set ns.display_cell = True %}
-        {% for i in group %}
-        <tr>
-            {% if ns.display_cell and i.timestamp == timestamp %}
-            
-            {% set author = i.author %}
-            {% set timestamp_ = i.timestamp %}
+            {% for timestamp, group in diff %}
+            {% set ns.display_cell = True %}
+            {% for i in group %}
+            <tr>
+                {% if ns.display_cell and i.timestamp == timestamp %}
 
-            {% else %}
+                {% set author = i.author %}
+                {% set timestamp_ = i.timestamp %}
 
-            {% set author = "" %}
-            {% set timestamp_ = "" %}
+                {% else %}
 
-            {% endif %}
-            <td>{{ timestamp_ }}</td>
-	    <td>{{ author }}</td>
-	    <td>{{ i.diff.field }}</td>
-            <td><pre>{{ i.diff.diff }}</pre></td>                
-            {% set ns.display_cell = False %}
-	</tr>
-        {% endfor %}
-        {% endfor %}
-    </tbody>
-    </table>
-    </details>
+                {% set author = "" %}
+                {% set timestamp_ = "" %}
 
-</div>
+                {% endif %}
+                <td>{{ timestamp_ }}</td>
+            <td>{{ author }}</td>
+            <td>{{ i.diff.field }}</td>
+                <td><pre>{{ i.diff.diff }}</pre></td>
+                {% set ns.display_cell = False %}
+        </tr>
+            {% endfor %}
+            {% endfor %}
+        </tbody>
+        </table>
+        </details>
 
-{% endif %}
-<form id="edit-form" class="form-horizontal" method="post" action="/datasets/{{dataset_id}}/traits/{{ publish_xref.id_ }}?resource-id={{ resource_id }}" enctype='multipart/form-data'>
-    <h2 class="text-center">Trait Information:</h2>
-    <div class="form-group">
-        <label for="pubmed-id" class="col-sm-2 control-label">Pubmed ID:</label>
-        <!-- Do not enter PubMed_ID if this trait has not been Published.
-             If the PubMed_ID you entered is alreday stored in our
-             database, all the following fields except Post Publication
-             Description will be ignored.  Do not enter any non-digit
-             character in this field. -->
-        <div class="col-sm-8">
-            <textarea name="pubmed-id" class="form-control" rows="1">{{ publish_xref.publication_id |default('', true) }}</textarea>
-            <input name="old_id_" class="changed" type="hidden" value="{{ publish_xref.publication_id |default('', true) }}"/>
-        </div>
-    </div>
-    <div class="form-group">
-        <label for="pre-pub-desc" class="col-sm-2 control-label">Pre Publication Description:</label>
-        <div class="col-sm-8">
-            <textarea name="pre-pub-desc" class="form-control" rows="4">{{ phenotype.pre_pub_description |default('', true) }}</textarea>
-            <input name="old_pre_pub_description" class="changed" type="hidden" value="{{ phenotype.pre_pub_description |default('', true) }}"/>
-        </div>
-        <!-- If the PubMed ID is entered, the Post Publication Description
-             will be shown to all users. If there is no PubMed ID, and the
-             Pre Publication Description is entered, only you and
-             authorized users can see the Post Publication Description -->
     </div>
-    <div class="form-group">
-        <label for="post-pub-desc" class="col-sm-2 control-label">Post Publication Description:</label>
-        <div class="col-sm-8">
-            <textarea name="post-pub-desc" class="form-control" rows="4">{{ phenotype.post_pub_description |default('', true) }}</textarea>
-            <input name="old_post_pub_description" class="changed" type="hidden" value="{{ phenotype.post_pub_description |default('', true) }}"/>
+
+    {% endif %}
+    <form id="edit-form" class="form-horizontal" method="post" action="/datasets/{{dataset_id}}/traits/{{ publish_xref.id_ }}?resource-id={{ resource_id }}" enctype='multipart/form-data'>
+        <div class="form-group">
+            <label for="pubmed-id" class="col-sm-3 col-lg-2 control-label text-left">Pubmed ID:</label>
+            <!-- Do not enter PubMed_ID if this trait has not been Published.
+                If the PubMed_ID you entered is alreday stored in our
+                database, all the following fields except Post Publication
+                Description will be ignored.  Do not enter any non-digit
+                character in this field. -->
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="pubmed-id" class="form-control" rows="1">{{ publish_xref.publication_id |default('', true) }}</textarea>
+                <input name="old_id_" class="changed" type="hidden" value="{{ publish_xref.publication_id |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="orig-desc" class="col-sm-2 control-label">Original Description:</label>
-        <div class="col-sm-8">
-            <textarea name="orig-desc" class="form-control" rows="4">{{ phenotype.original_description |default('', true) }}</textarea>
-            <input name="old_original_description" class="changed" type="hidden" value="{{ phenotype.original_description |default('', true) }}"/>
+        <div class="form-group">
+            <label for="pre-pub-desc" class="col-sm-3 col-lg-2 control-label text-left">Pre Publication Description:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="pre-pub-desc" class="form-control" rows="4">{{ phenotype.pre_pub_description |default('', true) }}</textarea>
+                <input name="old_pre_pub_description" class="changed" type="hidden" value="{{ phenotype.pre_pub_description |default('', true) }}"/>
+            </div>
+            <!-- If the PubMed ID is entered, the Post Publication Description
+                will be shown to all users. If there is no PubMed ID, and the
+                Pre Publication Description is entered, only you and
+                authorized users can see the Post Publication Description -->
         </div>
-    </div>
-    <div class="form-group">
-        <label for="units" class="col-sm-2 control-label">Units:</label>
-        <div class="col-sm-8">
-            <textarea name="units" class="form-control" rows="1">{{ phenotype.units |default('', true) }}</textarea>
-            <input name="old_units" class="changed" type="hidden" value="{{ phenotype.units |default('', true) }}"/>
+        <div class="form-group">
+            <label for="post-pub-desc" class="col-sm-3 col-lg-2 control-label text-left">Post Publication Description:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="post-pub-desc" class="form-control" rows="4">{{ phenotype.post_pub_description |default('', true) }}</textarea>
+                <input name="old_post_pub_description" class="changed" type="hidden" value="{{ phenotype.post_pub_description |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="pre-pub-abbrev" class="col-sm-2 control-label">
-            Pre Publication Abbreviation:
-        </label>
-        <div class="col-sm-8">
-            <textarea name="pre-pub-abbrev" class="form-control" rows="1">{{ phenotype.pre_pub_abbreviation |default('', true) }}</textarea>
-            <input name="old_pre_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.pre_pub_abbreviation |default('', true) }}"/>
+        <div class="form-group">
+            <label for="orig-desc" class="col-sm-3 col-lg-2 control-label text-left">Original Description:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="orig-desc" class="form-control" rows="4">{{ phenotype.original_description |default('', true) }}</textarea>
+                <input name="old_original_description" class="changed" type="hidden" value="{{ phenotype.original_description |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="post-pub-abbrev" class="col-sm-2 control-label">
-            Post Publication Abbreviation:
-        </label>
-        <div class="col-sm-8">
-            <textarea name="post-pub-abbrev" class="form-control" rows="1">{{ phenotype.post_pub_abbreviation |default('', true) }}</textarea>
-            <input name="old_post_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.post_pub_abbreviation |default('', true) }}"/>
+        <div class="form-group">
+            <label for="units" class="col-sm-3 col-lg-2 control-label text-left">Units:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="units" class="form-control" rows="1">{{ phenotype.units |default('', true) }}</textarea>
+                <input name="old_units" class="changed" type="hidden" value="{{ phenotype.units |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="labcode" class="col-sm-2 control-label">
-            Lab Code:
-        </label>
-        <div class="col-sm-8">
-            <textarea name="labcode" class="form-control" rows="1">{{ phenotype.lab_code |default('', true) }}</textarea>
-            <input name="old_lab_code" class="changed" type="hidden" value="{{ phenotype.lab_code |default('', true) }}"/>
+        <div class="form-group">
+            <label for="pre-pub-abbrev" class="col-sm-3 col-lg-2 control-label text-left">
+                Pre Publication Abbreviation:
+            </label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="pre-pub-abbrev" class="form-control" rows="1">{{ phenotype.pre_pub_abbreviation |default('', true) }}</textarea>
+                <input name="old_pre_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.pre_pub_abbreviation |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="submitter" class="col-sm-2 control-label">
-            Submitter:
-        </label>
-        <div class="col-sm-8">
-            <textarea name="submitter" class="form-control" rows="1">{{ phenotype.submitter |default('', true) }}</textarea>
-            <input name="old_submitter" class="changed" type="hidden" value="{{ phenotype.submitter |default('', true) }}"/>
+        <div class="form-group">
+            <label for="post-pub-abbrev" class="col-sm-3 col-lg-2 control-label text-left">
+                Post Publication Abbreviation:
+            </label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="post-pub-abbrev" class="form-control" rows="1">{{ phenotype.post_pub_abbreviation |default('', true) }}</textarea>
+                <input name="old_post_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.post_pub_abbreviation |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="owner" class="col-sm-2 control-label">Owner:</label>
-        <div class="col-sm-8">
-            <textarea name="owner" class="form-control" rows="1">{{ phenotype.owner |default('', true) }}</textarea>
-            <input name="old_owner" class="changed" type="hidden" value="{{ phenotype.owner |default('', true) }}"/>
+        <div class="form-group">
+            <label for="labcode" class="col-sm-3 col-lg-2 control-label text-left">
+                Lab Code:
+            </label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="labcode" class="form-control" rows="1">{{ phenotype.lab_code |default('', true) }}</textarea>
+                <input name="old_lab_code" class="changed" type="hidden" value="{{ phenotype.lab_code |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="authorized-users" class="col-sm-2 control-label">
-            Authorized Users:
-        </label>
-        <div class="col-sm-8">
-            <textarea name="authorized-users" class="form-control" rows="1">{{ phenotype.authorized_users |default('', true) }}</textarea>
-            <input name="old_authorized_users" class="changed" type="hidden" value="{{ phenotype.authorized_users |default('', true) }}"/>
+        <div class="form-group">
+            <label for="submitter" class="col-sm-3 col-lg-2 control-label text-left">
+                Submitter:
+            </label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="submitter" class="form-control" rows="1">{{ phenotype.submitter |default('', true) }}</textarea>
+                <input name="old_submitter" class="changed" type="hidden" value="{{ phenotype.submitter |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="authors" class="col-sm-2 control-label">Authors:</label>
-        <div class="col-sm-8">
-            <textarea name="authors" class="form-control" rows="2">{{ publication.authors |default('', true) }}</textarea>
-            <input name="old_authors" class="changed" type="hidden" value="{{ publication.authors |default('', true) }}"/>
+        <div class="form-group">
+            <label for="owner" class="col-sm-3 col-lg-2 control-label text-left">Owner:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="owner" class="form-control" rows="1">{{ phenotype.owner |default('', true) }}</textarea>
+                <input name="old_owner" class="changed" type="hidden" value="{{ phenotype.owner |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="title" class="col-sm-2 control-label">Title:</label>
-        <div class="col-sm-8">
-            <textarea name="title" class="form-control" rows="2">{{ publication.title |default('', true) }}</textarea>
-            <input name="old_title" class="changed" type="hidden" value="{{ publication.title |default('', true) }}"/>
+        <div class="form-group">
+            <label for="authorized-users" class="col-sm-3 col-lg-2 control-label text-left">
+                Authorized Users:
+            </label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="authorized-users" class="form-control" rows="1">{{ phenotype.authorized_users |default('', true) }}</textarea>
+                <input name="old_authorized_users" class="changed" type="hidden" value="{{ phenotype.authorized_users |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="abstract" class="col-sm-2 control-label">Abstract:</label>
-        <div class="col-sm-8">
-            <textarea name="abstract" class="form-control" rows="6">{{ publication.abstract |default('', true) }}</textarea>
-            <input name="old_abstract" class="changed" type="hidden" value="{{ publication.abstract |default('', true) }}"/>
+        <div class="form-group">
+            <label for="authors" class="col-sm-3 col-lg-2 control-label text-left">Authors:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="authors" class="form-control" rows="2" placeholder="Example: Roy S, Ingels J, Bohl CJ, McCarty M, Lu L, Mulligan MK, Mozhui K, Centeno A, Williams EG, Auwerx J, Williams RW">{{ publication.authors |default('', true) }}</textarea>
+                <input name="old_authors" class="changed" type="hidden" value="{{ publication.authors |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="journal" class="col-sm-2 control-label">Journal:</label>
-        <div class="col-sm-8">
-            <textarea name="journal" class="form-control" rows="1">{{ publication.journal |default('', true) }}</textarea>
-            <input name="old_journal" class="changed" type="hidden" value="{{ publication.journal_ |default('', true) }}"/>
+        <div class="form-group">
+            <label for="title" class="col-sm-3 col-lg-2 control-label text-left">Title:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="title" class="form-control" rows="2">{{ publication.title |default('', true) }}</textarea>
+                <input name="old_title" class="changed" type="hidden" value="{{ publication.title |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="pages" class="col-sm-2 control-label">Pages:</label>
-        <div class="col-sm-8">
-            <textarea name="pages" class="form-control" rows="1">{{ publication.pages |default('', true) }}</textarea>
-            <input name="old_pages" class="changed" type="hidden" value="{{ publication.pages |default('', true) }}"/>
+        <div class="form-group">
+            <label for="abstract" class="col-sm-3 col-lg-2 control-label text-left">Abstract:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="abstract" class="form-control" rows="6">{{ publication.abstract |default('', true) }}</textarea>
+                <input name="old_abstract" class="changed" type="hidden" value="{{ publication.abstract |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="month" class="col-sm-2 control-label">Month:</label>
-        <div class="col-sm-8">
-            <textarea name="month" class="form-control" rows="1">{{ publication.month |default('', true) }}</textarea>
-            <input name="old_month" class="changed" type="hidden" value="{{ publication.month |default('', true) }}"/>
+        <div class="form-group">
+            <label for="journal" class="col-sm-3 col-lg-2 control-label text-left">Journal:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="journal" class="form-control" rows="1">{{ publication.journal |default('', true) }}</textarea>
+                <input name="old_journal" class="changed" type="hidden" value="{{ publication.journal_ |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="year" class="col-sm-2 control-label">Year:</label>
-        <div class="col-sm-8">
-            <textarea name="year" class="form-control" rows="1">{{ publication.year |default('', true) }}</textarea>
-            <input name="old_year" class="changed" type="hidden" value="{{ publication.year |default('', true) }}"/>
+        <div class="form-group">
+            <label for="pages" class="col-sm-3 col-lg-2 control-label text-left">Pages:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="pages" class="form-control" rows="1">{{ publication.pages |default('', true) }}</textarea>
+                <input name="old_pages" class="changed" type="hidden" value="{{ publication.pages |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div class="form-group">
-        <label for="sequence" class="col-sm-2 control-label">Sequence:</label>
-        <div class="col-sm-8">
-            <textarea name="sequence" class="form-control" rows="6">{{ publish_xref.sequence |default('', true) }}</textarea>
-            <input name="old_sequence" class="changed" type="hidden" value="{{ publication.sequence |default('', true) }}"/>
+        <div class="form-group">
+            <label for="month" class="col-sm-3 col-lg-2 control-label text-left">Month:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="month" class="form-control" rows="1">{{ publication.month |default('', true) }}</textarea>
+                <input name="old_month" class="changed" type="hidden" value="{{ publication.month |default('', true) }}"/>
+            </div>
         </div>
-    </div>
-    <div style="margin-left: 13%;">
-        <a href="/datasets/{{ publish_xref.id_ }}/traits/{{ publish_xref.phenotype_id }}/csv?resource-id={{ resource_id }}" class="btn btn-link btn-sm">
-            Click to Download CSV Sample Data
-        </a>
-    </div>
-    <div class="form-group">
-        <input type = "file" class="col-sm-4 control-label" name = "file" />
-    </div>
-    <div class="col-xs-6">
-        <p>
-            Note: Current allowable sample headers are: {{ ', '.join(headers) }}
-        </p>
-    </div>
-    <div class="controls center-block" style="width: max-content;">
-        <input name="inbred-set-id" class="changed" type="hidden" value="{{ publish_xref.inbred_set_id }}"/>
-        <input name="phenotype-id" class="changed" type="hidden" value="{{ publish_xref.phenotype_id }}"/>
-        <input name="comments" class="changed" type="hidden" value="{{ publish_xref.comments }}"/>
-        <input type="submit" style="width: 125px; margin-right: 25px;" class="btn btn-primary form-control col-xs-2 changed" value="Submit Change">
-        <input type="reset" style="width: 110px;" class="btn btn-primary form-control col-xs-2 changed" onClick="window.location.reload();" value="Reset">
-    </div>
-</form>
+        <div class="form-group">
+            <label for="year" class="col-sm-3 col-lg-2 control-label text-left">Year:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="year" class="form-control" rows="1">{{ publication.year |default('', true) }}</textarea>
+                <input name="old_year" class="changed" type="hidden" value="{{ publication.year |default('', true) }}"/>
+            </div>
+        </div>
+        <div class="form-group">
+            <label for="sequence" class="col-sm-3 col-lg-2 control-label text-left">Sequence:</label>
+            <div class="col-sm-7 col-lg-8">
+                <textarea name="sequence" class="form-control" rows="6">{{ publish_xref.sequence |default('', true) }}</textarea>
+                <input name="old_sequence" class="changed" type="hidden" value="{{ publication.sequence |default('', true) }}"/>
+            </div>
+        </div>
+        <div style="margin-left: 13%;">
+            <a href="/datasets/{{ publish_xref.id_ }}/traits/{{ publish_xref.phenotype_id }}/csv?resource-id={{ resource_id }}" class="btn btn-link btn-sm">
+                Click to Download CSV Sample Data
+            </a>
+        </div>
+        <div class="form-group">
+            <input type = "file" class="col-md-4 control-label text-left" name = "file" />
+        </div>
+        <div class="col-xs-6">
+            <p>
+                Note: Current allowable sample headers are: {{ ', '.join(headers) }}
+            </p>
+        </div>
+        <div class="controls center-block" style="width: max-content;">
+            <input name="inbred-set-id" class="changed" type="hidden" value="{{ publish_xref.inbred_set_id }}"/>
+            <input name="phenotype-id" class="changed" type="hidden" value="{{ publish_xref.phenotype_id }}"/>
+            <input name="comments" class="changed" type="hidden" value="{{ publish_xref.comments }}"/>
+            <input type="submit" style="width: 125px; margin-right: 25px;" class="btn btn-success form-control col-xs-2 changed" value="Submit Change">
+            <input type="reset" style="width: 110px;" class="btn btn-danger form-control col-xs-2 changed" onClick="window.location.reload();" value="Reset">
+        </div>
+    </form>
+</div>
 
 {%endblock%}
 
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