From 33e2e09d00881de9b07274bc52b58587e5135cab Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 5 Sep 2018 09:49:09 +0000
Subject: ELASTICSEARCH settings and fix runserver.py to run without gunicorn

---
 README.md                | 12 +++++++++---
 etc/default_settings.py  | 10 +++++++++-
 wqflask/runserver.py     |  4 ++++
 wqflask/utility/tools.py |  1 +
 4 files changed, 23 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index 59645994..f0132e89 100644
--- a/README.md
+++ b/README.md
@@ -25,9 +25,15 @@ Once installed GN2 can be run online through a browser interface
 genenetwork2
 ```
 
-(default is http://localhost:5003/). For full examples (you'll need to
-set a number of environment variables), including running scripts and
-a Python REPL, see the startup script
+(default is http://localhost:5003/). A quick example is
+
+```sh
+env GN2_PROFILE=~/opt/gn-latest SERVER_PORT=5300 GENENETWORK_FILES=~/data/gn2_data/ ./bin/genenetwork2 ./etc/default_settings.py -gunicorn-dev
+```
+
+For full examples (you may need to set a number of environment
+variables), including running scripts and a Python REPL, also see the
+startup script
 [./bin/genenetwork2](https://github.com/genenetwork/genenetwork2/blob/testing/bin/genenetwork2).
 
 ## Testing
diff --git a/etc/default_settings.py b/etc/default_settings.py
index 3e54ad1f..85eab2c6 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -25,9 +25,17 @@ import os
 import sys
 
 GN_VERSION = open("../etc/VERSION","r").read()
+GN_SERVER_URL = "http://localhost:8880/" # REST API server
+
+# ---- MySQL
+
 SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s"
 SQL_ALCHEMY_POOL_RECYCLE = 3600
-GN_SERVER_URL = "http://localhost:8880/" # REST API server
+
+# ---- Elastic search
+
+ELASTICSEARCH_HOST = "localhost"
+ELASTICSEARCH_PORT = 9200
 
 # ---- Flask configuration (see website)
 TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/runserver.py b/wqflask/runserver.py
index 5f41d04d..c0ac980a 100644
--- a/wqflask/runserver.py
+++ b/wqflask/runserver.py
@@ -9,6 +9,7 @@
 
 from wqflask import app
 
+
 import logging
 import utility.logger
 logger = utility.logger.getLogger(__name__ )
@@ -27,6 +28,9 @@ app_config()
 
 werkzeug_logger = logging.getLogger('werkzeug')
 
+from utility.tools import WEBSERVER_MODE, SERVER_PORT
+port = int(SERVER_PORT)
+
 if WEBSERVER_MODE == 'DEBUG':
     app.run(host='0.0.0.0',
             port=port,
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index ea216a35..f12b0d76 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -233,6 +233,7 @@ def show_settings():
 # Cached values
 GN_VERSION         = get_setting('GN_VERSION')
 HOME               = get_setting('HOME')
+SERVER_PORT        = get_setting('SERVER_PORT')
 WEBSERVER_MODE     = get_setting('WEBSERVER_MODE')
 GN_SERVER_URL      = get_setting('GN_SERVER_URL')
 SQL_URI            = get_setting('SQL_URI')
-- 
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