From 2ddde04f4dd773d64705694e67f7cdcbe341637b Mon Sep 17 00:00:00 2001
From: christian
Date: Thu, 8 Sep 2016 16:40:47 +0200
Subject: Fix genotype & QTL plot vertical scaling

---
 wqflask/wqflask/static/new/javascript/biodalliance.js | 2 +-
 wqflask/wqflask/templates/marker_regression_gn1.html  | 4 +++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/wqflask/wqflask/static/new/javascript/biodalliance.js b/wqflask/wqflask/static/new/javascript/biodalliance.js
index 3cfc26eb..3b9e3b7f 100644
--- a/wqflask/wqflask/static/new/javascript/biodalliance.js
+++ b/wqflask/wqflask/static/new/javascript/biodalliance.js
@@ -23,7 +23,7 @@ BD.createBrowser = function(chr, start, end, speciesName, sources) {
 
         sources: sources,
 
-        maxHeight: 1000,
+        maxHeight: 1400,
         setDocumentTitle: false,
         prefix: '/dalliance/',
         workerPrefix: 'build/',
diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html
index a6c942dc..2bba1cc5 100644
--- a/wqflask/wqflask/templates/marker_regression_gn1.html
+++ b/wqflask/wqflask/templates/marker_regression_gn1.html
@@ -372,7 +372,8 @@
      BD.putSource({name: 'Genotype',
                    controlURI: "http://test-gn2.genenetwork.org/api_pre1/genotype/mouse/BXD.json",
                    URIBase: "http://test-gn2.genenetwork.org/api_pre1/genotype/mouse/",
-                   tier_type:            'rqtl-genotype',
+                   tier_type: 'rqtl-genotype',
+                   vOffset: 8,
                    pinned: true,
                    transposed: true,
                    style: [
@@ -425,6 +426,7 @@
                        type: 'default',
                        style: {
                            glyph: "LINEPLOT",
+                           AUTOMAX: "true",
                            MIN: 0,
                            MAX: 3,
                            HEIGHT: 200,
-- 
cgit v1.2.3


From 83774eb60deda8897c89cf29cf91065e02348115 Mon Sep 17 00:00:00 2001
From: christian
Date: Fri, 16 Sep 2016 13:15:04 +0200
Subject: Refetch SNP density on zoom

---
 wqflask/wqflask/templates/marker_regression_gn1.html | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html
index 2bba1cc5..bb2024f1 100644
--- a/wqflask/wqflask/templates/marker_regression_gn1.html
+++ b/wqflask/wqflask/templates/marker_regression_gn1.html
@@ -438,12 +438,14 @@
      BD.putSource({name: 'SNP density',
                    jbURI: "http://test-gn2.genenetwork.org/api_pre1/snp",
                    jbQuery: "",
+                   refetchOnZoom: true,
                    style: [{
                        type: 'default',
                        style: {
                            glyph: "HISTOGRAM",
                            MIN: 0,
                            MAX: 5000,
+                           AUTOMAX: "true",
                            HEIGHT: 60,
                            STEPS: 100,
                            COLOR1: "red",
-- 
cgit v1.2.3