From 2b3aaf9b9da45d6a4c4bb461edb4a2d4247ed8ea Mon Sep 17 00:00:00 2001 From: Zachary Sloan Date: Tue, 9 Oct 2012 17:49:46 -0500 Subject: Used tidyp to improve/beautify index_page.html --- misc/notes.txt | 5 + wqflask/wqflask/templates/index_page.html | 548 +++++++++++++++--------------- 2 files changed, 288 insertions(+), 265 deletions(-) diff --git a/misc/notes.txt b/misc/notes.txt index 76962804..fab9fac6 100644 --- a/misc/notes.txt +++ b/misc/notes.txt @@ -55,5 +55,10 @@ htop: Gives information on processes, cpu/memory load, etc dstat: Also gives various system information, resource usage, etc df: Reports file system disk space usage +=========================================== + +tidyp - Improves/beautifies html code +tidyp -m -i -w 100 index_page.html + diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index d3839c09..a209f302 100644 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -1,302 +1,320 @@ {% extends "base.html" %} {% block title %}GeneNetwork{% endblock %} -{% block content %} - - - - - - - + - +
  • Switzerland at the EPFL
    • + - - - +

    History and + Archive

    +
    +

    GeneNetwork's Time + Machine links to earlier versions that correspond to specific + publication dates.

    +
    + + +
    -

    Select and Search -

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    - Species: - - - -
    - Group: - - - -
    - Type: - - - -
    - Database: - - - -
    - - -

        Databases marked with ** suffix are not public yet. -
        Access requires user login.

    -
    - Search: - - - - -
    - - - -

        Enter terms, genes, ID numbers in the Search field. -
        Use * or ? wildcards (Cyp*a?, synap*). -
        Use quotes for terms such as "tyrosine kinase".

    - -
    - - -      -      - - -
    - - - -
    - - - - - - - - -

     ______________________________________________________ - -

      - -Quick HELP Examples and - - User's Guide

    - - -  You can also use advanced commands. Copy these simple examples -
      into the Get Any or Combined search fields: -
      - -
    • POSITION=(chr1 25 30) finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb. - -
    • MEAN=(15 16) LRS=(23 46) in the Combined field finds highly expressed genes (15 to 16 log2 units) AND with peak LRS linkage between 23 and 46. - +{% block content %} + +
    + + + - +
  • GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
    + in Combined finds synapse-associated genes with cis eQTL on Chr 4 from 122 and 155 Mb with LRS scores + between 9 and 999.
    • - +
  • RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
    + in Combined finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS + scores between 9 and 999.
    • + + + - +
  • Singapore at the NUS
    • - -
    +

    Select and + Search

    + +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + Species: + +
    Group: + +
    Type: + +
    Database: + +
    +

        Databases marked with ** + suffix are not public yet.
    +     Access requires user login.

    +
    + Search:
    +

        Enter terms, genes, ID numbers in the + Search field.
    +     Use * or ? wildcards (Cyp*a?, + synap*).
    +     Use quotes for terms such as "tyrosine + kinase".

    +
             
    +
    -
  • RIF=mitochondrial searches RNA databases for GeneRIF links. +

     ______________________________________________________

    -
  • WIKI=nicotine searches GeneWiki for genes that you or other users have annotated with the word nicotine. +

      Quick HELP + Examples and User's Guide

      You can also use advanced + commands. Copy these simple examples
    +   into the Get Any or Combined search fields: -
  • GO:0045202 searches for synapse-associated genes listed in the Gene Ontology. +
      +
    • POSITION=(chr1 25 30) finds genes, markers, or transcripts on + chromosome 1 between 25 and 30 Mb.
      • +
    • MEAN=(15 16) LRS=(23 46) in the Combined field finds + highly expressed genes (15 to 16 log2 units) AND with peak LRS linkage between 23 and 46.
      • -
    • GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)
      in Combined finds synapse-associated genes with cis eQTL on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. +
    • RIF=mitochondrial searches RNA databases for GeneRIF links.
      • -
    • RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)
      in Combined finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999. +
    • WIKI=nicotine searches GeneWiki for genes that you or other users have annotated + with the word nicotine.
      • +
    • GO:0045202 searches for synapse-associated genes listed in the + Gene Ontology.
      • -
    - -
    		• -

    Websites Affiliated with GeneNetwork

    -

    -

    -

    -

    ____________________________ +

    		+

    Websites Affiliated with + GeneNetwork

    -

    Getting Started   

    -
      -
    1. Select Species (or select All) -
    2. Select Group (a specific sample) -
    3. Select Type of data: -
        -
      • Phenotype (traits) -
      • Genotype (markers) -
      • Expression (mRNAs) -
      -
    4. Select a Database -
    5. Enter search terms in the Get Any or Combined field: words, genes, ID numbers, probes, advanced search commands -
    6. Click on the Search button -
    7. Optional: Use the Make Default button to save your preferences -
    +

    -

    ____________________________ +

      +
    • Genome + Browser at UTHSC
      • -

      How to Use GeneNetwork +

    • Galaxy at + UTHSC
      • -
      -

      Take a 20-40 minute GeneNetwork Tour that includes screen shots and typical steps in the analysis.

      -
      -
      -

      For information about resources and methods, select the INFO buttons.

      +
    • GeneNetwork at Amazon + Cloud (EC2)
      • +
    • GeneNetwork Source Codes at SourceForge
      • +
    • GeneNetwork Source Codes at GitHub
      • +
    -

    Try the Workstation site to explore data and features that are being implemented.

    +

    ____________________________

    +

    Getting Started +   

    -

    Review the Conditions and Contacts pages for information on the status of data sets and advice on their use and citation.

    +
      +
    1. Select Species (or select All)
      2. +
    2. Select Group (a specific sample)
      3. - +
    3. Select Type of data: +
        +
      • Phenotype (traits)
        • + +
      • Genotype (markers)
        • + +
      • Expression (mRNAs)
        • +
      +
      4. + +
    4. Select a Database
      5. + +
    5. Enter search terms in the Get Any or Combined field: words, + genes, ID numbers, probes, advanced search commands
      6. + +
    6. Click on the Search button
      7. + +
    7. Optional: Use the Make Default button to save your preferences
      8. +
    + +

    ____________________________

    + +

    How to Use + GeneNetwork

    + +
    +

    Take a 20-40 minute + GeneNetwork Tour that includes screen shots and + typical steps in the analysis.

    +
    + +
    +

    For information about + resources and methods, select the INFO buttons.

    +

    Try the Workstation site to explore data and features that are + being implemented.

    + +

    Review the Conditions + and Contacts pages for information on the status of data sets + and advice on their use and citation.

    +
    -

    Mirror and Development Sites

    +

    Mirror and Development + Sites

    - +
    -
    + + + + + {% endblock %} + -- cgit v1.2.3