From 28223e97e3e24c0ac759d7523d701b875cd6df7b Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 8 Dec 2020 17:04:41 -0600
Subject: Added method as a parameter for the correlation scatterplot so that
 it will default to the Spearman tab when the link is from a Spearman
 correlation

---
 wqflask/wqflask/correlation/corr_scatter_plot.py  | 2 ++
 wqflask/wqflask/templates/corr_scatterplot.html   | 8 ++++----
 wqflask/wqflask/templates/correlation_matrix.html | 3 ++-
 3 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/wqflask/wqflask/correlation/corr_scatter_plot.py b/wqflask/wqflask/correlation/corr_scatter_plot.py
index 6ab8c3d8..c87776bb 100644
--- a/wqflask/wqflask/correlation/corr_scatter_plot.py
+++ b/wqflask/wqflask/correlation/corr_scatter_plot.py
@@ -29,6 +29,8 @@ class CorrScatterPlot(object):
         self.trait_2 = create_trait(name=params['trait_2'], dataset=self.dataset_2)
         #self.trait_3 = create_trait(name=params['trait_3'], dataset=self.dataset_3)
 
+        self.method = params['method']
+
         primary_samples = self.dataset_1.group.samplelist
         if self.dataset_1.group.parlist != None:
             primary_samples += self.dataset_1.group.parlist
diff --git a/wqflask/wqflask/templates/corr_scatterplot.html b/wqflask/wqflask/templates/corr_scatterplot.html
index 1133fcd2..cd1998fa 100644
--- a/wqflask/wqflask/templates/corr_scatterplot.html
+++ b/wqflask/wqflask/templates/corr_scatterplot.html
@@ -118,17 +118,17 @@
   {% endif %}
 
   <ul class="nav nav-tabs">
-    <li class="active">
+    <li {% if method == 'pearson' %}class="active"{% endif %}>
       <a href="#tp1" data-toggle="tab">Pearson</a>
     </li>
-    <li>
+    <li {% if method == 'spearman' %}class="active"{% endif %}>
       <a href="#tp2" data-toggle="tab">Spearman Rank</a>
     </li>
   </ul>
 
   <div class="tab-content" style="min-width: 800px;">
 
-    <div class="tab-pane active" id="tp1">
+    <div class="tab-pane {% if method == 'pearson' %}active{% endif %}" id="tp1">
       <br>
       <div id="scatterplot2"></div>
       <br>
@@ -243,7 +243,7 @@
       </div>
     </div>
 
-    <div class="tab-pane" id="tp2">
+    <div class="tab-pane {% if method == 'spearman' %}active{% endif %}" id="tp2">
       <br>
       <div id="srscatterplot2"></div>
       <br>
diff --git a/wqflask/wqflask/templates/correlation_matrix.html b/wqflask/wqflask/templates/correlation_matrix.html
index 96ad9c35..fb0380c9 100644
--- a/wqflask/wqflask/templates/correlation_matrix.html
+++ b/wqflask/wqflask/templates/correlation_matrix.html
@@ -32,6 +32,7 @@
       {% endfor %}
     </tr>
     {% for trait in traits %}
+    {% set outer_loop = loop.index %}
     <tr>
       <td align="center"><input type="checkbox" class="checkbox" style="margin-left: 3px; margin-right: 1px;"></td>
       <td align="right" style="padding-right: 4px;" >
@@ -54,7 +55,7 @@
       {% if result[1] == 0 %}
       <td nowrap="ON" align="middle" bgcolor="#eeeeee" style="padding: 3px; line-height: 1.1;">N/A</td>
       {% else %}
-      <td nowrap="ON" align="middle" class="corr_cell" style="padding: 3px; line-height: 1.1;"><a href="/corr_scatter_plot?dataset_1={% if trait.dataset.name == 'Temp' %}Temp_{{ trait.dataset.group.name }}{% else %}{{ trait.dataset.name }}{% endif %}&dataset_2={% if result[0].dataset.name == 'Temp' %}Temp_{{ result[0].dataset.group.name }}{% else %}{{ result[0].dataset.name }}{% endif %}&trait_1={{ trait.name }}&trait_2={{ result[0].name }}"><font style="font-size: 12px; color: #3071a9; font-weight: bold;" ><span class="corr_value">{{ '%0.2f' % result[1] }}</span><br>{{ result[2] }}</font></a></td>
+      <td nowrap="ON" align="middle" class="corr_cell" style="padding: 3px; line-height: 1.1;"><a href="/corr_scatter_plot?method={% if loop.index > outer_loop %}spearman{% else %}pearson{% endif %}&dataset_1={% if trait.dataset.name == 'Temp' %}Temp_{{ trait.dataset.group.name }}{% else %}{{ trait.dataset.name }}{% endif %}&dataset_2={% if result[0].dataset.name == 'Temp' %}Temp_{{ result[0].dataset.group.name }}{% else %}{{ result[0].dataset.name }}{% endif %}&trait_1={{ trait.name }}&trait_2={{ result[0].name }}"><font style="font-size: 12px; color: #3071a9; font-weight: bold;" ><span class="corr_value">{{ '%0.2f' % result[1] }}</span><br>{{ result[2] }}</font></a></td>
       {% endif %}
       {% endif %}
       {% endfor %}
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