From 27538980f93c1d72b0b2d76151312f3fbce4c9a5 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Mon, 10 May 2021 08:24:42 +0300
Subject: add previous endpoint for correlation

---
 wqflask/base/data_set.py | 37 -------------------------------------
 wqflask/wqflask/views.py | 13 ++++++++-----
 2 files changed, 8 insertions(+), 42 deletions(-)

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 468c4da0..d0f5e6f2 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -655,42 +655,7 @@ class DataSet(object):
                 "Dataset {} is not yet available in GeneNetwork.".format(self.name))
             pass
 
-    def fetch_probe_trait_data(self, sample_list=None):
-        if sample_list:
-            self.samplelist = sample_list
-        else:
-            self.samplelist = self.group.samplelist
-
-        if self.group.parlist != None and self.group.f1list != None:
-            if (self.group.parlist + self.group.f1list) in self.samplelist:
-                self.samplelist += self.group.parlist + self.group.f1list
-
-        query = """
-            SELECT Strain.Name, Strain.Id FROM Strain, Species
-            WHERE Strain.Name IN {}
-            and Strain.SpeciesId=Species.Id
-            and Species.name = '{}'
-            """.format(create_in_clause(self.samplelist), *mescape(self.group.species))
-        logger.sql(query)
-        results = dict(g.db.execute(query).fetchall())
-        sample_ids = [results[item] for item in self.samplelist]
-
-        query = """SELECT * from ProbeSetData WHERE Id in ( SELECT ProbeSetXRef.DataId FROM (ProbeSet, ProbeSetXRef, ProbeSetFreeze) WHERE ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id  and ProbeSetFreeze.Name = 'HC_M2_0606_P'  and ProbeSet.Id = ProbeSetXRef.ProbeSetId  order by ProbeSet.Id )    and  StrainId in ({})""".format(
-            ",".join(str(sample_id) for sample_id in sample_ids))
 
-        results = g.db.execute(query).fetchall()
-
-        # with conn:
-        #     cursor = conn.cursor()
-        #     cursor.execute(query)
-        #     results = cursor.fetchall()
-        trait_data = {}
-        for trait_id, StrainId, value in results:
-            if trait_id in trait_data:
-                trait_data[trait_id].append(value)
-            else:
-                trait_data[trait_id] = [value]
-        self.trait_data = trait_data
 
     def get_trait_data(self, sample_list=None):
         if sample_list:
@@ -711,7 +676,6 @@ class DataSet(object):
         logger.sql(query)
         results = dict(g.db.execute(query).fetchall())
         sample_ids = [results[item] for item in self.samplelist]
-        print("the number of sample ids are", len(sample_ids))
 
         # MySQL limits the number of tables that can be used in a join to 61,
         # so we break the sample ids into smaller chunks
@@ -762,7 +726,6 @@ class DataSet(object):
             trait_sample_data.append(results)
 
         trait_count = len(trait_sample_data[0])
-        print("the trait count is >>>", trait_count)
         self.trait_data = collections.defaultdict(list)
 
         # put all of the separate data together into a dictionary where the keys are
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index b042a211..19779651 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -881,11 +881,14 @@ def network_graph_page():
 def corr_compute_page():
     logger.info("In corr_compute, request.form is:", pf(request.form))
     logger.info(request.url)
-    import time
-    initial_time = time.time()
-    correlation_results = compute_correlation(request.form)
-    print(">>>>Time taken by this endpoint",time.time()-initial_time)
-    return render_template("test_correlation_page.html",correlation_results=correlation_results)
+    template_vars = show_corr_results.CorrelationResults(request.form)
+    return render_template("correlation_page.html", **template_vars.__dict__)
+
+    # to test the new  correlation api uncomment these lines
+
+    # correlation_results = compute_correlation(request.form)
+    # print(">>>>Time taken by this endpoint",time.time()-initial_time)
+    # return render_template("test_correlation_page.html",correlation_results=correlation_results)
 
 @app.route("/corr_matrix", methods=('POST',))
 def corr_matrix_page():
-- 
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