From 2697301045266b40f571eeb2f9c7d8eb220552b4 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Thu, 27 Aug 2020 01:28:08 +0300
Subject: Replace mysqldb's "escape" with the one from utils.db_tools

Mysqldb's escape returns a binary string. Use utils.db_tools which adds an extra
step of converting the binary string to a string.
---
 wqflask/base/mrna_assay_tissue_data.py           | 2 +-
 wqflask/base/trait.py                            | 2 +-
 wqflask/wqflask/api/correlation.py               | 2 +-
 wqflask/wqflask/correlation/show_corr_results.py | 2 +-
 wqflask/wqflask/do_search.py                     | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py
index 12f18f71..f1929518 100644
--- a/wqflask/base/mrna_assay_tissue_data.py
+++ b/wqflask/base/mrna_assay_tissue_data.py
@@ -5,7 +5,7 @@ from flask import g
 from utility import db_tools
 from utility import Bunch
 
-from MySQLdb import escape_string as escape
+from utility.db_tools import escape
 
 
 from utility.logger import getLogger
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 2fd5d725..e3507ae1 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -19,7 +19,7 @@ Redis = get_redis_conn()
 from wqflask import app
 
 import simplejson as json
-from MySQLdb import escape_string as escape
+from utility.db_tools import escape
 from pprint import pformat as pf
 
 from flask import Flask, g, request, url_for, redirect, make_response, render_template
diff --git a/wqflask/wqflask/api/correlation.py b/wqflask/wqflask/api/correlation.py
index 7da13121..f5b50dcd 100644
--- a/wqflask/wqflask/api/correlation.py
+++ b/wqflask/wqflask/api/correlation.py
@@ -2,7 +2,7 @@ import collections
 
 import scipy
 
-from MySQLdb import escape_string as escape
+from utility.db_tools import escape
 
 from flask import g
 
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index e5b87c6a..91146e5b 100644
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -35,7 +35,7 @@ from wqflask.correlation import correlation_functions
 from utility.benchmark import Bench
 import utility.webqtlUtil
 from utility.type_checking import is_str, get_float, get_int, get_string
-from MySQLdb import escape_string as escape
+from utility.db_tools import escape
 
 
 from flask import Flask, g
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py
index 7e71f7d7..00636563 100644
--- a/wqflask/wqflask/do_search.py
+++ b/wqflask/wqflask/do_search.py
@@ -4,7 +4,7 @@ import json
 
 from flask import Flask, g
 
-from MySQLdb import escape_string as escape
+from utility.db_tools import escape
 from pprint import pformat as pf
 
 import sys
-- 
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