From 2444d60a93ef7c9900ed9a52877bff0ee08fbfb6 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Thu, 6 May 2021 22:54:05 +0000
Subject: Because each permutations value is returned as an array, need to just
 take the first item to convert to numbers

---
 wqflask/wqflask/marker_regression/rqtl_mapping.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/wqflask/wqflask/marker_regression/rqtl_mapping.py b/wqflask/wqflask/marker_regression/rqtl_mapping.py
index cd43577e..b9cb99cc 100644
--- a/wqflask/wqflask/marker_regression/rqtl_mapping.py
+++ b/wqflask/wqflask/marker_regression/rqtl_mapping.py
@@ -385,7 +385,7 @@ def process_pair_scan_results(result):
 def process_rqtl_perm_results(num_perm, results):
     perm_vals = []
     for item in results:
-        perm_vals.append(item)
+        perm_vals.append(item[0])
 
     perm_output = perm_vals
     suggestive = np.percentile(np.array(perm_vals), 67)
-- 
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