From 218e62488de585c3934809f3eb42847d27969764 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 22 Mar 2022 20:25:11 +0000
Subject: Fix logic for setting interval parameter

The parameter should never be interval if pair_scan is being run; not checking for this causes the --interval tag to pointlessly be included when running pair-scan, which also interferes with caching
---
 wqflask/wqflask/marker_regression/rqtl_mapping.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/wqflask/wqflask/marker_regression/rqtl_mapping.py b/wqflask/wqflask/marker_regression/rqtl_mapping.py
index c7a3451a..3bf06ea6 100644
--- a/wqflask/wqflask/marker_regression/rqtl_mapping.py
+++ b/wqflask/wqflask/marker_regression/rqtl_mapping.py
@@ -49,7 +49,7 @@ def run_rqtl(trait_name, vals, samples, dataset, pair_scan, mapping_scale, model
     if do_control == "true" and control_marker:
         post_data["control"] = control_marker
 
-    if not manhattan_plot:
+    if not manhattan_plot and not pair_scan:
         post_data["interval"] = True
     if cofactors:
         post_data["addcovar"] = True
-- 
cgit v1.2.3