From 2114ad9e84ad7778e048b52cf865b5f031ceab88 Mon Sep 17 00:00:00 2001 From: BonfaceKilz Date: Fri, 23 Apr 2021 17:27:31 +0300 Subject: Rename index_page_orig to index_page --- wqflask/wqflask/templates/index_page.html | 222 +++++++++------- wqflask/wqflask/templates/index_page_orig.html | 339 ------------------------- wqflask/wqflask/views.py | 2 +- 3 files changed, 136 insertions(+), 427 deletions(-) mode change 100644 => 100755 wqflask/wqflask/templates/index_page.html delete mode 100755 wqflask/wqflask/templates/index_page_orig.html diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html old mode 100644 new mode 100755 index 31846f87..87cf1b45 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -1,78 +1,73 @@ {% extends "base.html" %} {% block title %}GeneNetwork{% endblock %} +{% block css %} + +{% endblock %} {% block content %} - - - -
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{{ flash_me() }} -
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  • System Maintenance Code
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    + + + + -->
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    Affiliates and mirrors

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    Links

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    Websites affiliated with GeneNetwork

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    • Genome Browser at UTHSC
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    • Galaxy at - UTHSC
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    • GeneNetwork 1 at Amazon - Cloud (EC2)
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    • GeneNetwork 1 Source Code at SourceForge
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    • GeneNetwork 2 Source Code at GitHub
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    GN1 Mirror and development sites

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    GeneNetwork v2:

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    GeneNetwork v1:

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    + + @@ -268,11 +303,7 @@ {%endblock%} {% block js %} - - - + + + + + + {% endblock %} diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html deleted file mode 100755 index 87cf1b45..00000000 --- a/wqflask/wqflask/templates/index_page_orig.html +++ /dev/null @@ -1,339 +0,0 @@ -{% extends "base.html" %} -{% block title %}GeneNetwork{% endblock %} -{% block css %} - -{% endblock %} -{% block content %} - -
    - - {{ flash_me() }} - -
    - -
    - -
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    Advanced commands

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    You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms:

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    • POSITION=(chr1 25 30) finds genes, markers, or transcripts on - chromosome 1 between 25 and 30 Mb.
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    • MEAN=(15 16) in the Combined field finds - highly expressed genes (15 to 16 log2 units)
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    • RANGE=(1.5 2.5) in the Any field finds traits with values with a specified fold-range (minimum = 1). - Useful for finding "housekeeping genes" (1.0 1.2) or highly variable molecular assays (10 100).
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    • LRS=(15 1000) or LOD=(2 8) finds all traits with peak LRS or LOD scores between lower and upper limits.
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    • LRS=(9 999 Chr4 122 155) finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
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    • cisLRS=(15 1000 5) or cisLOD=(2 8 5) finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, - with an inclusion zone of 5 Mb around the parent gene.
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    • transLRS=(15 1000 5) or transLOD=(2 8 5) finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, - with an exclusion zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on - (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb).
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    • POSITION=(Chr4 122 130) cisLRS=(9 999 10) - finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores - between 9 and 999 and an inclusion zone of 10 Mb.
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    • RIF=mitochondrial searches RNA databases for - GeneRIF links.
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    • WIKI=nicotine searches - GeneWiki for genes that you or other users have annotated - with the word nicotine.
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    • GO:0045202 searches for synapse-associated genes listed in the - - Gene Ontology.
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    • RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10) - finds diabetes-associated transcripts with peak - trans eQTLs on Chr 2 between 100 and 105 Mb with LRS - scores between 9 and 999.
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    Affiliates

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    News

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    Github

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    Links

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    GeneNetwork v2:

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    GeneNetwork v1:

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    • Main website at UTHSC
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    • Time Machine: Full GN versions from 2009 to 2016 (mm9)
      • - Cloud (EC2) -
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    - -{%endblock%} - -{% block js %} - - - - - - - - - -{% endblock %} diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index c4b510d4..156b4772 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -156,7 +156,7 @@ def index_page(): import_collections = params['import_collections'] if import_collections == "true": g.user_session.import_traits_to_user(params['anon_id']) - return render_template("index_page_orig.html", version=GN_VERSION) + return render_template("index_page.html", version=GN_VERSION) @app.route("/tmp/") -- cgit v1.2.3