From 1bbf80ac9ff7f28409c1469070bc2e66df74899e Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 1 Oct 2019 11:33:35 -0500
Subject: Changed alias search to only search aliases in symbol field

Fixed issue where authors sometimes weren't encoded correctly for global search
---
 wqflask/wqflask/do_search.py                 | 19 +++++++++++--------
 wqflask/wqflask/templates/gsearch_pheno.html | 11 +++++++++--
 2 files changed, 20 insertions(+), 10 deletions(-)

diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py
index e0f4eb17..a7f117ec 100644
--- a/wqflask/wqflask/do_search.py
+++ b/wqflask/wqflask/do_search.py
@@ -109,23 +109,26 @@ class MrnaAssaySearch(DoSearch):
                      'Additive Effect']
 
     def get_where_clause(self):
-
-        aliases = get_aliases(escape(self.search_term[0]), self.dataset.group.species)
-        if len(aliases) > 0:
-            search_string = " ".join(aliases)
-        else:
-            search_string = escape(self.search_term[0])
+        search_string = escape(self.search_term[0])
 
         if self.search_term[0] != "*":
-            match_clause = """(MATCH (ProbeSet.Name,
+            match_clause = """((MATCH (ProbeSet.Name,
                         ProbeSet.description,
                         ProbeSet.symbol,
                         alias,
                         GenbankId,
                         UniGeneId,
                         Probe_Target_Description)
-                        AGAINST ('%s' IN BOOLEAN MODE)) and
+                        AGAINST ('%s' IN BOOLEAN MODE))
                                 """ % (search_string)
+
+            aliases = get_aliases(search_string, self.dataset.group.species)
+            if len(aliases) > 0:
+                match_clause += " or "
+                alias_string = " ".join(aliases)
+                match_clause += "(MATCH (ProbeSet.symbol) AGAINST ('%s' IN BOOLEAN MODE))) and " % alias_string
+            else:
+                match_clause += ") and "
         else:
             match_clause = ""
 
diff --git a/wqflask/wqflask/templates/gsearch_pheno.html b/wqflask/wqflask/templates/gsearch_pheno.html
index 4e142846..c626a589 100644
--- a/wqflask/wqflask/templates/gsearch_pheno.html
+++ b/wqflask/wqflask/templates/gsearch_pheno.html
@@ -184,10 +184,17 @@
                       'render': function(data, type, row, meta) {
                         author_list = data.authors.split(",")
                         if (author_list.length >= 6) {
-                          return author_list.slice(0, 6).join(",") + ", et al."
+                          author_string = author_list.slice(0, 6).join(",") + ", et al."
                         } else{
-                          return data.authors
+                          author_string = data.authors
                         }
+
+			                  try {
+                            return decodeURIComponent(escape(author_string))
+			                  } catch(err) {
+			                      return author_string
+                        }
+
                       }
                     },
                     {
-- 
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