From 1b83ff353bf86709643c671ff78a69fd9ede72a8 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 27 Apr 2020 16:57:43 -0500
Subject: Added a script for a default runner

---
 etc/default_settings.py |  2 ++
 scripts/run_debug.sh    | 20 ++++++++++++++++++++
 2 files changed, 22 insertions(+)
 create mode 100755 scripts/run_debug.sh

diff --git a/etc/default_settings.py b/etc/default_settings.py
index 75f84dc4..053b906d 100644
--- a/etc/default_settings.py
+++ b/etc/default_settings.py
@@ -28,6 +28,8 @@ GN_VERSION = open("../etc/VERSION","r").read()
 SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s"
 SQL_ALCHEMY_POOL_RECYCLE = 3600
 GN_SERVER_URL = "http://localhost:8880/" # REST API server
+GN2_BASE_URL = "http://genenetwork.org/" # to pick up REST API
+GN2_BRANCH_URL = GN2_BASE_URL
 
 # ---- Flask configuration (see website)
 TRAP_BAD_REQUEST_ERRORS = True
diff --git a/scripts/run_debug.sh b/scripts/run_debug.sh
new file mode 100755
index 00000000..be7ecdb8
--- /dev/null
+++ b/scripts/run_debug.sh
@@ -0,0 +1,20 @@
+#! /bin/bash
+#
+# PLEASE DO NOT CHANGE THIS FILE - copy it elsewhere to run
+#
+# Run with GN2_PROFILE and SERVER_PORT overrides, e.g.
+#
+#   env GN2_PROFILE=/usr/local/guix-profiles/gn-latest SERVER_PORT=5010 scripts/run_debug.sh
+
+[ -z $GN2_PROFILE ] && export GN2_PROFILE=/usr/local/guix-profiles/gn-latest
+[ -z $SERVER_PORT ] && export SERVER_PORT=5010
+
+echo Running on port $SERVER_PORT from $GN2_PROFILE 
+
+cwd=`pwd`
+echo Running source from $cwd
+
+mkdir -p ~/tmp
+
+env TMPDIR=~/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG GENENETWORK_FILES=/export/data/genenetwork/genotype_files/ SQL_URI=mysql://webqtlout:webqtlout@localhost/db_webqtl ./bin/genenetwork2 etc/default_settings.py -gunicorn-dev 
+
-- 
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