From 149542045e0baedde9781cdd78dfba64920bb23f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Tue, 27 Sep 2022 11:01:49 +0300
Subject: Unit Test: Fix unit test for Chromosome functions.

---
 wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py | 2 +-
 wqflask/tests/unit/wqflask/marker_regression/test_run_mapping.py   | 5 +++--
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
index 24400b33..0d1bafc3 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
@@ -54,7 +54,7 @@ class TestGemmaMapping(unittest.TestCase):
         this_chromosomes = {}
         for i in range(1, 5):
             this_chromosomes[f'CH{i}'] = (AttributeSetter({"name": f"CH{i}"}))
-        chromosomes = AttributeSetter({"chromosomes": this_chromosomes})
+        chromosomes = AttributeSetter({"chromosomes": lambda cursor: this_chromosomes})
 
         dataset_group = MockGroup(
             {"name": "GP1", "genofile": "file_geno"})
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_run_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_run_mapping.py
index 868b0b0b..2e1b5810 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_run_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_run_mapping.py
@@ -45,7 +45,7 @@ class TestRunMapping(unittest.TestCase):
         self.dataset = AttributeSetter(
             {"fullname": "dataset_1", "group": self.group, "type": "ProbeSet"})
 
-        self.chromosomes = AttributeSetter({"chromosomes": chromosomes})
+        self.chromosomes = AttributeSetter({"chromosomes": lambda cur: chromosomes})
         self.trait = AttributeSetter(
             {"symbol": "IGFI", "chr": "X1", "mb": 123313, "display_name": "Test Name"})
 
@@ -251,12 +251,13 @@ class TestRunMapping(unittest.TestCase):
 
     def test_get_chr_length(self):
         """test for getting chromosome length"""
+        cursor = mock.MagicMock()
         chromosomes = AttributeSetter({"chromosomes": self.chromosomes})
         dataset = AttributeSetter({"species": chromosomes})
         results = get_chr_lengths(
             mapping_scale="physic", mapping_method="reaper", dataset=dataset, qtl_results=[])
         chr_lengths = []
-        for key, chromo in self.chromosomes.chromosomes.items():
+        for key, chromo in self.chromosomes.chromosomes(cursor).items():
             chr_lengths.append({"chr": chromo.name, "size": chromo.length})
 
         self.assertEqual(chr_lengths, results)
-- 
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