From 1109861a705eaf1dc1efb865a852f87860d0bcac Mon Sep 17 00:00:00 2001
From: DannyArends
Date: Fri, 11 Sep 2015 18:16:01 +0200
Subject: Adding empty WGCNA class, and creating it in views.py

---
 wqflask/wqflask/views.py                |  7 ++++++-
 wqflask/wqflask/wgcna/__init__.py       |  0
 wqflask/wqflask/wgcna/wgcna_analysis.py | 12 ++++++++++++
 3 files changed, 18 insertions(+), 1 deletion(-)
 create mode 100755 wqflask/wqflask/wgcna/__init__.py
 create mode 100644 wqflask/wqflask/wgcna/wgcna_analysis.py

diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index acbbf203..cd186078 100755
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -46,6 +46,9 @@ from wqflask.interval_mapping import interval_mapping
 from wqflask.correlation import show_corr_results
 from wqflask.correlation_matrix import show_corr_matrix
 from wqflask.correlation import corr_scatter_plot
+
+from wqflask.wgcna import wgcna_analysis
+
 from utility import temp_data
 
 from base import webqtlFormData
@@ -176,6 +179,8 @@ def help():
 
 @app.route("/wgcna", methods=('POST',))
 def wcgna():
+    print("In wgcna, request.form is:", request.form)
+    template_vars = wgcna_analysis.WGCNA(request.form)
     return render_template("wgcna_results.html")
 
 @app.route("/news")
@@ -327,7 +332,7 @@ def marker_regression_page():
         'mapmethod_rqtl_geno',
         'mapmodel_rqtl_geno'
     )
-    print("Random Print too see if it is running:", initial_start_vars)
+    print("Marker regression called with initial_start_vars:", initial_start_vars)
     start_vars = {}
     for key, value in initial_start_vars.iteritems():
         if key in wanted or key.startswith(('value:')):
diff --git a/wqflask/wqflask/wgcna/__init__.py b/wqflask/wqflask/wgcna/__init__.py
new file mode 100755
index 00000000..e69de29b
diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py
new file mode 100644
index 00000000..824b943c
--- /dev/null
+++ b/wqflask/wqflask/wgcna/wgcna_analysis.py
@@ -0,0 +1,12 @@
+
+
+class WGCNA(object):
+    def __init__(self, start_vars):
+        print("Initialization of WGCNA")
+
+    def run_wgcna(self):
+        print("Starting WGCNA analysis")
+
+    def process_wgcna_results(self, results):
+        print("Processing WGCNA output")
+
-- 
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