From 0cd4b09cc56c5dda7bda4ed989ab0ba72c43ac31 Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Wed, 7 Jun 2023 09:43:52 +0300
Subject: Add publication page

* wqflask/wqflask/templates/publication.html: New page.
* wqflask/wqflask/views.py (get_dataset): New function.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 wqflask/wqflask/templates/publication.html | 82 ++++++++++++++++++++++++++++++
 wqflask/wqflask/views.py                   | 13 +++++
 2 files changed, 95 insertions(+)
 create mode 100644 wqflask/wqflask/templates/publication.html

diff --git a/wqflask/wqflask/templates/publication.html b/wqflask/wqflask/templates/publication.html
new file mode 100644
index 00000000..d0f6633e
--- /dev/null
+++ b/wqflask/wqflask/templates/publication.html
@@ -0,0 +1,82 @@
+{% extends "base.html" %}
+
+{% block css %}
+<style type="text/css">
+ .page-header {
+     text-underline-offset: 0.5rem;
+     padding: 1em;
+ }
+
+ .panel-metadata {
+     display: inline-block;
+     width: fit-content;
+     height: fit-content;
+     padding: 0;
+ }
+
+ .panel-metadata dt {
+     color: green;
+ }
+
+ .panel-metadata dt::after {
+     content: ":";
+ }
+
+</style>
+{% endblock %}
+
+{% block title %}Dataset: {{ name }}{% endblock %}
+
+{% block content %}
+
+<header class="page-header text-justify">
+    <h1>
+	{% if metadata.title %}
+	<u>{{ metadata.title}}</u>
+        {% else %}
+        {{ name }}
+        {% endif %}
+    </h1>
+</header>
+
+<div class="container">
+    {% if metadata == {} %}
+    <p class="lead">We appreciate your interest, but unfortunately, we don't have any additional information available for: <strong>{{ name }}</strong>. If you have any other questions or need assistance with something else, please feel free to reach out to us.</p>
+    {% else %}
+    <div class="panel-about panel panel-info panel-metadata text-muted{{ float_p }}">
+        <div class="panel-heading"><strong><span class="glyphicon glyphicon-info-sign aria-hidden=true"></span> Details</strong> </div>
+        <div class="panel-body">
+            <dl class="dl-horizontal">
+                {% if metadata.pubMedId %}
+		<dt>PUBMED</dt>
+		<dd>
+		    <a href="{{ metadata.pubMedId }}" target="_blank">{{ metadata.pubMedId.split("/")[-1] }}</a>
+		</dd>
+		{% endif %}
+                {% if metadata.abstract %} <dt>Abstract</dt> <dd>{{ metadata.abstract}}</dd> {% endif %}
+                {% if metadata.month %} <dt>Month</dt> <dd>{{ metadata.month }}</dd> {% endif %}
+                {% if metadata.pages %} <dt>Pages</dt> <dd>{{ metadata.pages }}</dd> {% endif %}
+                {% if metadata.volume %} <dt>Volume</dt> <dd>{{ metadata.volume }}</dd> {% endif %}
+            </dl>
+        </div>
+    </div>
+    {% if metadata.phenotypeOfPublication %}
+    <div class="container">
+	<h2>Related Phenotypes:</h2>
+	<table class="table">
+	    {% for link in metadata.phenotypeOfPublication %}
+	    <tr>
+		<td>
+		    <a href="{{ link }}" target="_blank">{{ link }}</a>
+		</td>
+	    </tr>
+	    {% endfor %}
+	</table>
+
+    </div>
+    {% endif %}
+    {% endif %}
+
+</div>
+
+{% endblock %}
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 895ad0cb..d980e5e3 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -1118,3 +1118,16 @@ def get_dataset(name):
         metadata=metadata,
         float_p=float_p
     )
+
+
+@app.route("/publication/<name>", methods=('GET',))
+def get_publication(name):
+    metadata = requests.get(
+        urljoin(
+            GN3_LOCAL_URL,
+            f"/api/metadata/publication/{name}")
+    ).json()
+    return render_template(
+        "publication.html",
+        metadata=metadata,
+    )
-- 
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