From 0c9ec1de388359916abc7386154093fd0d76dbf0 Mon Sep 17 00:00:00 2001
From: DannyArends
Date: Fri, 17 Feb 2017 21:31:09 +0100
Subject: Cleaning up the templates, adding the LOC adjusted column

---
 wqflask/wqflask/templates/phewas_analysis.html         |  4 ++--
 wqflask/wqflask/templates/show_trait_PheWAS_tools.html | 16 +++++++++++-----
 2 files changed, 13 insertions(+), 7 deletions(-)

diff --git a/wqflask/wqflask/templates/phewas_analysis.html b/wqflask/wqflask/templates/phewas_analysis.html
index 4dbc071f..91c47a10 100644
--- a/wqflask/wqflask/templates/phewas_analysis.html
+++ b/wqflask/wqflask/templates/phewas_analysis.html
@@ -10,12 +10,12 @@
     {%- endfor %}
   <h2>Top 5 PheWAS hits</h2>
   <table width="100%">
-  <tr><th>GN ID</th><th>Phenotype</th><th>Phenosome</th><th>LOD</th></tr>
+  <tr><th>GN ID</th><th width="60%">Phenotype</th><th>Phenosome</th><th>LOD</th><th>LOD<sub>( {{ results['mtadjust'] }} )</sub></th></tr>
   {% for r in range(5) %}
     <tr>
     {% for c in range(results['tabulardata']|length) %}
       <td>
-      {% if c == 3 %}
+      {% if c >= 3 %}
       {{results['tabulardata'][c][r]|float|round(2)}}
       {% else %}
       {{results['tabulardata'][c][r]}}
diff --git a/wqflask/wqflask/templates/show_trait_PheWAS_tools.html b/wqflask/wqflask/templates/show_trait_PheWAS_tools.html
index d8193652..d4e9ae66 100644
--- a/wqflask/wqflask/templates/show_trait_PheWAS_tools.html
+++ b/wqflask/wqflask/templates/show_trait_PheWAS_tools.html
@@ -17,24 +17,30 @@
           <div class="tab-pane active" id="PheWAS">
             <div style="margin-top: 25px" class="form-horizontal">
                 <br>PheWAS options:
+<!--
                 <div class="mapping_method_fields form-group">
-                    <label for="strain_limit" style="text-align:left;" class="col-xs-3 control-label">Strain&nbsp;limit</label>
+                    <label for="num_strain_limit" style="text-align:left;" class="col-xs-3 control-label">Strain&nbsp;limit</label>
                     <div style="margin-left: 20px;" class="col-xs-4 controls">
                         <input name="num_strain_limit" value="15" type="text" class="form-control">
                     </div>
-                </div>
+                </div> -->
                 <div class="mapping_method_fields form-group">
-                    <label for="strain_limit" style="text-align:left;" class="col-xs-3 control-label">Plot&nbsp;rotation</label>
+                    <label for="num_region" style="text-align:left;" class="col-xs-3 control-label">Region&nbsp;size</label>
                     <div style="margin-left: 20px;" class="col-xs-4 controls">
-                        <input name="num_rotation" value="30" type="text" class="form-control">
+                        <input name="num_region" value="2" type="text" class="form-control">
                     </div>
                 </div>
                 <div class="mapping_method_fields form-group">
                   <label for="mtadjust" style="text-align:left;" class="col-xs-3 control-label">P&nbsp;adjustment</label>
                   <div style="margin-left: 20px;width: 225px;" class="col-xs-4 controls">
                     <select name="sel_mtadjust" class="form-control">
-                      <option value="qvalue">False Discovery Rate</option>
+                      <option value="fdr">False Discovery Rate</option>
                       <option value="BH">Benjamini Hochberg</option>
+                      <option value="holm">Holm</option>
+                      <option value="hochberg">Hochberg</option>
+                      <option value="hommel">Hommel</option>
+                      <option value="bonferroni">Bonferroni</option>
+
                     </select>
                   </div>
                 </div>
-- 
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