From cd5b32a69215bf5c168b7619ebc881908845204c Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 10 Feb 2021 08:11:33 +0300
Subject: add broken links checker to workflow

---
 .github/workflows/main.yml | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

(limited to '.github/workflows')

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 2342796a..79c69699 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -46,3 +46,22 @@ jobs:
         WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
         GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
         etc/default_settings.py -c -m unittest discover -v
+
+    - name: Start Genenetwork as a  Background Task
+      run: |
+        env GN2_PROFILE=/gn2-profile \
+        TMPDIR=/tmp SERVER_PORT=5004 \
+        WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
+        GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
+        etc/default_settings.py
+
+    - name: Test for Broken Links
+      run: |
+
+        env GN2_PROFILE=/gn2-profile \
+        TMPDIR=/tmp\
+        WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
+        GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
+        etc/default_settings.py -c -m\
+        /__w/genenetwork/genenetwork/test/requests/links_scraper/genelinks.py 
+
-- 
cgit 1.4.1


From 02ac2fd38fea7f85b3ef89464157a7c0d1ffcac7 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 10 Feb 2021 08:14:03 +0300
Subject: fix:starting genenetwork on the background

---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to '.github/workflows')

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 79c69699..a8642806 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -53,7 +53,7 @@ jobs:
         TMPDIR=/tmp SERVER_PORT=5004 \
         WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
         GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py
+        etc/default_settings.py&
 
     - name: Test for Broken Links
       run: |
-- 
cgit 1.4.1


From e67e6d7f88ffb21e4101147c5abadb2b7c78e5ae Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 10 Feb 2021 08:18:47 +0300
Subject: fix error

---
 .github/workflows/main.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

(limited to '.github/workflows')

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index a8642806..d4649d4f 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -62,6 +62,5 @@ jobs:
         TMPDIR=/tmp\
         WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
         GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py -c -m\
-        /__w/genenetwork/genenetwork/test/requests/links_scraper/genelinks.py 
+        etc/default_settings.py -c -m  /__w/genenetwork/genenetwork/test/requests/links_scraper/genelinks.py 
 
-- 
cgit 1.4.1


From f3a8fdc660504e0ea74ae63d5ed7c891db6e3963 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Wed, 10 Feb 2021 08:20:18 +0300
Subject: fix paths issues

---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to '.github/workflows')

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index d4649d4f..5d46ccb9 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -62,5 +62,5 @@ jobs:
         TMPDIR=/tmp\
         WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
         GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py -c -m  /__w/genenetwork/genenetwork/test/requests/links_scraper/genelinks.py 
+        etc/default_settings.py -c -m  /__w/genenetwork2/genenetwork2/test/requests/links_scraper/genelinks.py 
 
-- 
cgit 1.4.1


From 6f3273429482dea1aaaa4e5fe61b178485e271b8 Mon Sep 17 00:00:00 2001
From: Alexander Kabui
Date: Thu, 11 Feb 2021 07:26:04 +0300
Subject: edit workflow

---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to '.github/workflows')

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 5d46ccb9..a36abc0a 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -62,5 +62,5 @@ jobs:
         TMPDIR=/tmp\
         WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
         GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
-        etc/default_settings.py -c -m  /__w/genenetwork2/genenetwork2/test/requests/links_scraper/genelinks.py 
+        etc/default_settings.py -c  /__w/genenetwork2/genenetwork2/test/requests/links_scraper/genelinks.py 
 
-- 
cgit 1.4.1