Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-05-05 | tests: test_species: Add test cases for TestTheSpecies class | BonfaceKilz | |
2021-05-04 | Removed unused rpy import in run_mapping.py | zsloan | |
2021-05-03 | Account for the possibility of the R being returned as 0.999... by scipy ↵ | zsloan | |
when a trait is correlated against itself - before the 0.999... was preventing it from switching to calculating Spearman for the values above the diagonal in the correlation matrix | |||
2021-05-03 | apply limit to for results | Alexander Kabui | |
2021-05-01 | autopep8 for file | Alexander Kabui | |
2021-05-01 | delete demo correlation page | Alexander Kabui | |
2021-05-01 | modify column for p_val | Alexander Kabui | |
2021-05-01 | add default values for empt columns | Alexander Kabui | |
2021-05-01 | add toggle for columns | Alexander Kabui | |
2021-04-30 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
2021-04-30 | Fixed issue where Network Graph wouldn't show edges if multiple nodes had ↵ | zsloan | |
the same trait name; instead use combo of trait name and dataset name as the edge IDs | |||
2021-04-30 | autopep8: Run autopep8 100 times with target rules | BonfaceKilz | |
Rules used are: E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,E242, E251,E252,E26,E265,E266,E27,E301,E302,E303,E304,E305,E306, E401,E501,E70,E701,W291,W292,W293,W391,W504,E101,E11,E121, E122,E123,E124,E125,E126,E127,E128,E129,E131,E133 | |||
2021-04-30 | autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E101, E11 | BonfaceKilz | |
2021-04-30 | autopep8: Fix W504 | BonfaceKilz | |
2021-04-30 | autopep8: Fix W291, W292, W293, W391 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E70 and E701 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E501 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E401 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E301,E302,E303,E304,E305,E306 | BonfaceKilz | |
2021-04-30 | autopep8: Fix E20-E27 | BonfaceKilz | |
Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3 | |||
2021-04-30 | add template for correlation result | Alexander Kabui | |
2021-04-29 | I think the import of collect.py got removed with recent changes, so I'm ↵ | zsloan | |
adding it back | |||
2021-04-29 | Merge branch 'testing' into bug/network_graph_fixes | zsloan | |
2021-04-29 | Fix corr_scatter_plot url to include method - without method it was throwing ↵ | zsloan | |
an error | |||
2021-04-29 | Don't draw edges between a trait and itself | zsloan | |
2021-04-29 | Changed the way sample data is fetched for network graph to include parents/f1s | zsloan | |
2021-04-29 | Merge branch 'testing' into Feature/Add-upload-data-forms | BonfaceKilz | |
2021-04-29 | Run `sed -i 's/(object)//g'` | BonfaceKilz | |
See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g' | |||
2021-04-29 | base: trait: Remove unused function | BonfaceKilz | |
* wqflask/base/trait.py (jsonable_table_row): Delete it. | |||
2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
* wqflask/base/data_set.py (Dataset.get_accession_id): Delete it. | |||
2021-04-29 | base: data_set: Apply pep-8 | BonfaceKilz | |
2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
* wqflask/base/data_set.py (riset): Delete class method. | |||
2021-04-29 | base: data_set: Rewrite data_set using @dataclass | BonfaceKilz | |
@dataclasses should be used to hold only data. Since dataset only encapsulates data, re-writing it using a dataclass makes it more readable and easier to follow. | |||
2021-04-29 | tests: test_data_set: Update test | BonfaceKilz | |
2021-04-29 | tests: unit: test_data_set: Remove unused mock | BonfaceKilz | |
2021-04-29 | wqflask: show_trait: Autopep-8 buffer | BonfaceKilz | |
2021-04-29 | wqflask: show_trait: Remove unused imports. | BonfaceKilz | |
* wqflask/wqflask/show_trait/show_trait.py: Delete unused imports. | |||
2021-04-29 | wqflask: Add new js file for processing menu entries | BonfaceKilz | |
* wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js: New file. Copy of dataset_select_menu_orig.js that will later modified... * wqflask/wqflask/templates/edit_trait.html: Use :point_up:. | |||
2021-04-29 | templates: edit_trait.html: Trim form to only contain selection menu | BonfaceKilz | |
2021-04-29 | templates: edit_trait.html: Add extra fields for the form | BonfaceKilz | |
Add form elements for selecting group, type, and dataset. This mimics the home page. | |||
2021-04-29 | templates: edit_trait.html: Add comment headers | BonfaceKilz | |
The comment headers mark different sections. | |||
2021-04-29 | wqflask: views: Add new function for selecting a dataset | BonfaceKilz | |
* wqflask/wqflask/views.py(edit_trait_page): New function. | |||
2021-04-29 | templates: edit_trait.html: New file | BonfaceKilz | |
Copy of submit_trait.html. This is a copy; that'll form the basis of the new edit page. | |||
2021-04-29 | wqflask: views: Replace dict de-structuring with kw arguments | BonfaceKilz | |
* wqflask/wqflask/views.py (submit_trait_form): Use kw arguments when passing variables to the template. This is more readable. | |||
2021-04-28 | Merge pull request #568 from zsloan/bug/fix_gemma_temptrait_covariates | zsloan | |
Fix the way temp traits are displayed when selecting covariates from a collection | |||
2021-04-28 | Added something to jsonable in trait.py to account for temp traits (this is ↵ | zsloan | |
necessary for them to show up correctly when selecting traits from collections in pop-up windows, like when selecting cofactors for mapping) | |||
2021-04-28 | Merge pull request #567 from zsloan/bug/fix_gemma_temptrait_covariates | zsloan | |
Account for temp traits when adding covariates with GEMMA mapping | |||
2021-04-28 | Account for temp traits when adding covariates with GEMMA mapping | zsloan | |
2021-04-28 | wqflask: views: Delete stale comments | BonfaceKilz | |