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2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-05On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-01-31On branch masterLei Yan
2014-01-31On branch masterLei Yan
2014-01-30The calculations for the manhattan plot are now run from the commandZachary Sloan
line as a background process, allowing multiple to be run at the same time without the time increasing.
2014-01-30Added forgotten html page to repoSam
Fixed bugs where- - User tried to login with an email address that hasn't been registered - User tries to register an email address that was already registered Testing is still needed to confirm bugs were fixed properly and new ones weren't introduced
2014-01-30Before trying to fix user login issueSam
2014-01-30Most of the work is done towards running lmm.py from the command lineZachary Sloan
and storing the results in redis
2014-01-29Limited number of markers in marker regression result table toZachary Sloan
those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis
2014-01-25On branch masterLei Yan
2014-01-25On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24Committer: root <root@alexandria.uthsc.edu>root
On branch master
2014-01-24Added natural sort to sort the index column for the sample data inZachary Sloan
the trait page Hid the Quick Search on the index page until it is working well. Started writing a file to run the pyLMM code in the background to avoid memory issues/timing out
2014-01-24Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2014-01-23Histogram is workingZachary Sloan
Fixed some bug with generating the manhattan plot for the HLC data set
2014-01-03Wrote some code for the histogram figureZachary Sloan
Changed some code in dataset to try and track down the issue with Amelie's file
2013-12-31Finished code to remove a trait or multiple traits from a collectionSam
Wrote code to make buttons a little cleaner and more obvious when dealing with collections (they now enable themselves when traits that can be added or removed to/from a collection are selected)
2013-12-30Fixed issue where box plots initially appeared below the bar chartZachary Sloan
instead of in the second tab In the process of trying to fix the genofile to json parser so we can map Amelie's rat data In the process of having the color of bars in the bar chart "follow" them when they are resorted.
2013-12-30Collections changesSam
2013-12-18Merge /home/zas1024/geneSam
2013-12-18Fixed issue where "Type" and "Dataset" had no default values forZachary Sloan
the home page drop-downs
2013-12-18Merge /home/zas1024/geneLei Yan
2013-12-18Add a coffee script file for correlation scatter plot function.Lei Yan
2013-12-17Added the option to choose which method to use for the intervalZachary Sloan
mapping function (pyLMM or qtl reaper)
2013-12-12Put the code that rebuilds the bar chart into a functionZachary Sloan
Still need to fix issue where attribute colors don't stay with their associated samples/strains
2013-12-11Got sort by name/value buttons working and committing before tryingZachary Sloan
to put some of the d3 code into a function
2013-12-11Got color by trait working, but still need to add a legend and makeZachary Sloan
some other small changes (like removing samples that don't overlap with the selected trait) Tentatively removed jquery-ui from base.html; I'm not sure if we're still using this anywhere, but removing it doesn't seem to have had an impact on the trait page
2013-12-05Now trims selected trait's values by the samples of the primary trait andZachary Sloan
gets their distinct values Created function that creates a dictionary of distinct values and their corresponding colors
2013-12-05Interval map graph now works properlyZachary Sloan
Tried to export trait data for "color by trait" function
2013-11-28Adding to collection now shows collection you added to and has informative ↵Sam
message as to how many traits added.
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