| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-05-27 | Display diffs from editing in a nice table. | BonfaceKilz | |
| 2022-05-27 | Remove case-attributes list from the metadata edit page | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (display_phenotype_metadata): Delete "headers" variable when passing it to the template. *wqflask/wqflask/templates/edit_phenotype.html: Remove special not that lists the case-attributes with their IDs in brackets. | |||
| 2022-05-27 | Save diffed data to redis (wip) | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (show_case_attribute_columns): pass the diff'ed data to the template (update_case_attributes): New function. Parses data from JS and saves it redis in "case-attr-diffs:review" * wqflask/wqflask/templates/case_attributes.html: Make post request---to save the data to redis for approval. | |||
| 2022-05-27 | Make a POST request on data edit | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py: When editing a case-attribute, make a post request to the relevant end-point. | |||
| 2022-05-27 | Parse case attributes as a tuple, not as a dict | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (approve_data): Return the fetched case_attributes as is. * wqflask/wqflask/templates/case_attributes.html: Parse the case attributes as a tuple. | |||
| 2022-05-27 | Update case-attributes page to make it editable | BonfaceKilz | |
| 2022-05-27 | Fix the url to the GN3 server | Frederick Muriuki Muriithi | |
| 2022-05-27 | Display correlation computation errors correctly | Frederick Muriuki Muriithi | |
| - Display any correlation computation errors in a form that tells the user what they did wrong. | |||
| 2022-05-27 | Fix UI Errors | Frederick Muriuki Muriithi | |
| - Display index correctly - Move checkbox element to the table body - Make progress indicator prominent | |||
| 2022-05-26 | Enumerate rows and add checkboxes | Frederick Muriuki Muriithi | |
| 2022-05-26 | Fetch the menu data from GN3 | Frederick Muriuki Muriithi | |
| 2022-05-26 | Indicate error if system in unable to fetch menu | Frederick Muriuki Muriithi | |
| 2022-05-25 | Add 'submit' class to Submit button when selecting cofactors | zsloan | |
| This was mistakenly removed with a recent change and caused cofactors selection to stop working | |||
| 2022-05-24 | Handle async results. Reduce poll time. | Frederick Muriuki Muriithi | |
| Handle asynchronous results for partial correlation against a select number of traits. Reduce the polling time from 10 seconds to 5 seconds | |||
| 2022-05-19 | Change Pca to PCA | zsloan | |
| 2022-05-17 | Make collection page tools open in new tab/window | zsloan | |
| 2022-05-17 | Include relevant CSS files in correlation scatterplot page to improve ↵ | zsloan | |
| covariate selection appearance | |||
| 2022-05-17 | Change collection table in get_covariates_from_collection to be the same as ↵ | zsloan | |
| in get_traits_from_collection.js | |||
| 2022-05-17 | Remove the Delete Collection option from the view collection page and | zsloan | |
| rename Delete Rows to just Remove | |||
| 2022-05-16 | Check for queued results explicitly | Frederick Muriuki Muriithi | |
| Rather than checking the status field, check for the queued field instead and only display the 'in progress' indicator when the computation has been queued for later. | |||
| 2022-05-16 | Fix errors: with_target_db and target_traits issues | Frederick Muriuki Muriithi | |
| - Ensure the 'with_target_db' value is set up correctly when sending request to GN3 API - Set up empty target traits list in case none has been provided | |||
| 2022-05-10 | Ignore metadata when importing collection file | zsloan | |
| 2022-05-10 | Add metadata to collection export file | zsloan | |
| 2022-05-10 | Add user email to form so it can be included in collection export metadata | zsloan | |
| 2022-05-10 | Add rest of JS/Python code for importing collections from files | zsloan | |
| 2022-05-10 | Export trait string in original format | zsloan | |
| Previously I was splitting by colon to make it comma-delimited, but this is pointless since this file is going to be reformatted with the colons after being imported | |||
| 2022-05-10 | Create import_collection function | zsloan | |
| 2022-05-10 | Add button for collection import and JS for submitting form | zsloan | |
| 2022-05-10 | Display user email on collection list page when user_name doesn't exist | zsloan | |
| 2022-05-10 | Refactor JS code for exports some | zsloan | |
| 2022-05-10 | Fix the way the collection name is stored in the form | zsloan | |
| 2022-05-10 | Add collection export function/endpoint | zsloan | |
| 2022-05-10 | Change export_search_results_csv to export_traits_csv since it's more accurate | zsloan | |
| 2022-05-10 | Add JS for submitting collection export | zsloan | |
| Also refactor the way the exports and BNW submission are done | |||
| 2022-05-10 | Add button for new collection export | zsloan | |
| 2022-05-06 | Compute pcorrs with selected target traits | Frederick Muriuki Muriithi | |
| Modify the code to request computation of partial correlations with selected traits rather than a complete dataset. | |||
| 2022-05-06 | Add UI for partial correlation against selected targets | Frederick Muriuki Muriithi | |
| 2022-05-06 | Make the results table dataTable class | Frederick Muriuki Muriithi | |
| 2022-05-06 | Display the trait name in the header during edits | BonfaceKilz | |
| 2022-05-06 | Move "Update History" to it's own page | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (edit_phenotype): Move the logic for fetching the diff data from here to... (show_history): ... here. * wqflask/wqflask/templates/edit_phenotype.html: Move html section for displaying recent edits from here to ... * wqflask/wqflask/templates/edit_history.html: ... here. | |||
| 2022-05-06 | Align the submit button to the left | BonfaceKilz | |
| 2022-05-06 | Remove the "Reset" button | BonfaceKilz | |
| 2022-05-06 | Re-order the form fields to match the APA citation style | BonfaceKilz | |
| 2022-05-06 | Fix typos; "Pre" and "Post", as prefixes, aren't standalone words | BonfaceKilz | |
| 2022-05-06 | Remove the "Sequence" form field | BonfaceKilz | |
| 2022-05-06 | Adjust the row-size of the "Authors" field to 3 | BonfaceKilz | |
| 2022-05-06 | Shrink the rows of the "Volume" field to 1 | BonfaceKilz | |
| 2022-05-05 | Change mm9 to mm10 for creating the UCSC Genome Browser link | zsloan | |
| 2022-05-04 | Add text-field for the "Volume" of a Publication | BonfaceKilz | |
| 2022-05-03 | Replace references of "publish_xref.pubmed_id" with "publication.id" | BonfaceKilz | |
| See: https://issues.genenetwork.org/issues/edit-metadata-bugs.html * wqflask/wqflask/metadata_edits (edit_phenotype): When diffing, should there be a null, use a "" during page display. Also, use the "publication.id_" instead of "publication.pubmed_id" when updating a publication. * wqflask/wqflask/templates/edit_phenotype.html: In the HTML form, use values of "publication" instead of "publish_xref" when referring to a publication. | |||
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