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2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-20Remover dependency to logger_tree (may reintroduce later)pjotrp
2016-04-20[PATCH 018/100] Find external tools: refactored code to work with GNU GuixPjotr Prins
2016-04-20Removed import htmlgen as is not used (apparently)pjotrp
2016-04-18Additive effect lines are now separated by chromosome (like the qtl line in t...zsloan
2016-04-14Fixed issue where qtl lines in interval mapping wouldn't connect between chro...zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge...zsloan
2016-04-07Added option to change the maximum y-axis value for GN1 mapping figurezsloan
2016-04-07Permutation figure and x-axis label should change to correctly reflect the ma...zsloan
2016-04-07SNP Track option should now work for GN1 mapping figurezsloan
2016-04-06The option to switch between LRS and LOD for the GN1 mapping figure should no...zsloan
2016-04-06Setting lodm to always be 1.0 fixes the issue where it would incorrectly disp...zsloan
2016-04-06Permutations (suggestive/significant lines, legend, and histogram) should now...zsloan
2016-04-05Bootstrap test should now work correctly for qtl reaper mapping method on ful...zsloan
2016-04-05Fixed issue where haplotype analyst option would appear when using genetic(ce...zsloan
2016-03-30Disabled Haplotype Analyst option if mapping scale is centimorgan/geneticzsloan
2016-03-30GN1 mapping now when mapping scale is centimorgan (for R/qtl)zsloan
2016-03-29Additive effect option now works for GN1 mapping figurezsloan
2016-03-29Forgot to add GeneralObject file needed for haplotype analyst in last commitzsloan
2016-03-29Haplotype Analyst now works for GN1 mapping figurezsloan
2016-03-28Legend option now works for GN1 mapping figurezsloan
2016-03-28Trait sample data table width now dynamically changes with number of attribut...zsloan
2016-03-24Graph width can now be set in Mapping Resultszsloan
2016-03-24Add the Gene Track option to display the Gene Band for single chromosome viewzsloan
2016-03-24Mapping results table is now limited to the top 200 markers; previously the p...zsloan
2016-03-23You can now select chromosome and an Mb range from the top menu and remapzsloan
2016-03-23Fixed GN1 mapping plots so that Y axis and the Y coordinates of manhattan plo...zsloan
2016-03-21Manhattan plot option now works for GN1 map, and GEMMA is set to display as m...zsloan
2016-03-21Changed code parsing marker csv file to increase GEMMA speedzsloan
2016-03-18Forgot to not retrieve sample data for the phenotype global search with the l...zsloan
2016-03-18Replaced header with other information in qtl mapzsloan
2016-03-15Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-03-15Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-15Fixed the mapping figure track that lets you zoom into a smaller rangezsloan
2016-03-14Changed the way headers look across all pageszsloan
2016-03-03Fixed issue where correlation would do mapping if run after mappingzsloan
2016-03-03Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-03-03Fixed trait export to include SE valueszsloan
2016-03-03Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-03Update gsearch.pyLei Yan
2016-03-02Increased gsearch speed by removing unnecessary query for sample datazsloan
2016-03-01Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-01Committing change to dataset menu before pullzsloan
2016-03-01Fixed csv download and removed non-working "Download Table" button for collec...zsloan
2016-02-26PLINK should not run correctly and graph using GN1 imagezsloan
2016-02-25fixed untracked fileszsloan
2016-02-24GEMMA mostly working with gn1 mapping, though there may be some issue with th...zsloan
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