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2021-05-21Removed a couple unused parameters for run_rqtlzsloan
2021-05-21run_rqtl now reads in permutation outputzsloan
2021-05-20Re-implemented R/qtl to get the results from the GN3 APIzsloan
2021-05-18Last commit failed to correctly change Y-axis position; this should fix thatzsloan
2021-05-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-18Fixed issue that caused the sample values in the Haplotype Analyst to be off ↵zsloan
by 1
2021-05-17handle None for tissue input dataAlexander Kabui
2021-05-14Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-14Changed logic in SampleList to set num_cases_exists to False if all existing ↵zsloan
N are 1
2021-05-14Changed logic in has_num_cases to ignore N=1zsloan
2021-05-13pep8 formatting & delete commentsAlexander Kabui
2021-05-13integrate comute corr for top results in uiAlexander Kabui
2021-05-13add dataset and trait-name in ui templateAlexander Kabui
2021-05-13Fix load_phenotypes to run with GN2 latestArthur Centeno
2021-05-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-12Remove maxlength from value/SE input fields and base the width off of the ↵zsloan
max digits for that sample group's vals
2021-05-12Get max digits for each sample group's vals and create a function for ↵zsloan
getting a sample group's vals so the same logic isn't repeated several times
2021-05-11Merge pull request #563 from Alexanderlacuna/feature/integrate-correlation-apiBonfaceKilz
Feature/integrate correlation api
2021-05-11replace font-awesomeAlexander Kabui
2021-05-11replace datatable scroller cdnAlexander Kabui
2021-05-11replace datatable scrollerAlexander Kabui
2021-05-11modify js & add button for test correlationAlexander Kabui
2021-05-10Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-10Change loading.html to write genotype filename even when there was no ↵zsloan
selection for it, and also to have 'genotype file' be lowercase to match all other metadata labels
2021-05-10fix f string typouditgulati
2021-05-10use f string in gsearchuditgulati
2021-05-10add ServerSideTable to gsearch geno and pheno tablesuditgulati
2021-05-10move geno chr, mb to gsearch main query for phenotype searchuditgulati
2021-05-10update gsearch pheno searchuditgulati
2021-05-10minor-fix:remove debug statementsAlexander Kabui
2021-05-10Merge branch 'testing' into feature/integrate-correlation-apiAlexander Kabui
2021-05-10use new correlation code in endpointAlexander Kabui
2021-05-10minor changes to interfaceAlexander Kabui
2021-05-10remove debug statementsAlexander Kabui
2021-05-10add previous endpoint for correlationAlexander Kabui
2021-05-09fix:add lit for trait listAlexander Kabui
2021-05-08tests: test_gen_menu: Remove app_context initialisationBonfaceKilz
This is no longer required since the global object "Flask.g.db" is no longer coupled to the gen_menu module.
2021-05-08utility: startup_config: Use python3 f-stringsBonfaceKilz
2021-05-08utility: startup_config: Break up long import statementBonfaceKilz
2021-05-08utility: startup_config: Remove dead commentsBonfaceKilz
2021-05-08wqflask: Process MySQL URI and store the result in the global scopeBonfaceKilz
2021-05-08api: gen_menu: Inject MySQL conn object and use that for queriesBonfaceKilz
2021-05-08api: router: Inject MySQL object when fetching menu itemsBonfaceKilz
2021-05-08tests: test_gen_menu: Update failing testsBonfaceKilz
Update tests to use (and mock) the injected MySQL connection object.
2021-05-07Display cofactors = None on the loading page if there are no cofactorszsloan
2021-05-07Check if num_bootstrap is in start_vars, since it won't exist for ↵zsloan
non-qtlreaper methods
2021-05-07Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-07Fixed issue that caused /submit_trait page to not load properlyzsloan
2021-05-07Add typing + autopep8 formattingAlexander Kabui
2021-05-07remove comments prettify htmlAlexander Kabui
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