| Age | Commit message (Expand) | Author |
|---|
| 2013-08-21 | Fixed an issue where correlationFunction was being imported•••instead of its updated name correlation_function
| Zachary Sloan |
| 2013-08-21 | Just removed a couple print statements | Zachary Sloan |
| 2013-08-15 | Removed the markers with no variance (and thus no p-values) from the•••manhattan plot
| Zachary Sloan |
| 2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-14 | Made some changes related to getting marker regression working for•••some datasets
| Zachary Sloan |
| 2013-08-14 | Removed some duplicate files in the maintenance folder | Zachary Sloan |
| 2013-08-13 | Added several test files and the file with the class that•••they import (browser_test.py)
| Zachary Sloan |
| 2013-08-08 | Fixed issue where points in marker regression manhattan plot•••weren't positioned on the x-axis
| Zachary Sloan |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets•••Improved the templates for a couple pages related to changing user
password, etc
| Zachary Sloan |
| 2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense•••for them not to have genofiles yet)
| Zachary Sloan |
| 2013-07-30 | Just added some print statements to debug an issue with LMM code•••Also added some to notes
| Zachary Sloan |
| 2013-07-23 | Fixed a couple issues with he quick_search_table.py script•••Added notes on using percona to optimise mysql to gn_installation_notes.txt
Started moving "get_trait_data" to DataSet since it is the same regardless
of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc)
| Zachary Sloan |
| 2013-07-19 | Finished integrating code that reads sample list from geno files•••withouot using reaper and caches results so it doesn't need
to read the file every single time someone loads a page
| Zachary Sloan |
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles•••and builds each groups' samplelist
| Zachary Sloan |
| 2013-07-18 | Added Amelie's rat data genotypes•••Got human mapping mostly working
Fixed dataset dropdown menus
| Zachary Sloan |
| 2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork•••Conflicts:
wqflask/base/webqtlConfigLocal.py
wqflask/maintenance/gen_select_dataset.py
wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
| Zachary Sloan |
| 2013-07-18 | Added to installation notes•••Removed webqtlConfigLocal file containing passwords
Updated main page dropdown menus (dataset_menu_structure.json)
| Zachary Sloan |
| 2013-07-17 | Fixed gen_select_dataset.py•••Appended redis installation info to notes
| Zachary Sloan |
| 2013-07-16 | Merge branch 'master' of https://github.com/zsloan/genenetwork•••Conflicts:
misc/gn_installation_notes.txt
| Zachary Sloan |
| 2013-07-16 | Wrote code that can get a dataset's type for every single GN•••dataset; previously we could not view traits in datasets that
were not in the DBType table in the database
| Zachary Sloan |
| 2013-07-10 | Updated gn_installation_notes | Zachary Sloan |
| 2013-07-09 | Committing installation notes before editing them more | Zachary Sloan |
| 2013-07-03 | Updated notes and created requirements.txt file | Zachary Sloan |
| 2013-07-03 | Made the table in the group manager sortable, etc | Zachary Sloan |
| 2013-06-27 | Created a group manager page where user administrators can create•••groups of datasets to give/add read privileges to
| Zachary Sloan |
| 2013-06-26 | Merge /home/sam/gene | Zachary Sloan |
| 2013-06-26 | More signin changes | Sam |
| 2013-06-26 | Moved code creating DataSets object to a function in dataset.py•••Added caching to creating DataSets object
| Zachary Sloan |
| 2013-06-26 | Got code that creates DataSets object running•••Fixed one genofile that had extra quotation marks
in the comments that caused an error
Defaults mb_graph_interval to 1 for species without chromosome
lengths in megabases
| Zachary Sloan |
| 2013-06-25 | Added DataSets class to dataset.py that will be used to create list of•••confidential datasets
| Zachary Sloan |
| 2013-06-21 | Added a thank you for siging in message•••Fixed issues where homepage was reloaded in modal after siging in
| Sam |
| 2013-06-21 | Merge /home/zas1024/gene | Sam |
| 2013-06-21 | Working on getting logins working again | Sam |
| 2013-06-21 | Fixed bug where cursor was still being used in query | Zachary Sloan |
| 2013-06-20 | Merge branch 'flask' of /home/sam/gene•••Conflicts:
wqflask/wqflask/templates/index_page.html
| Zachary Sloan |
| 2013-06-20 | Added file corr_result_helpers.py that includes the function that•••normalizes the lists of sample values
| Zachary Sloan |
| 2013-06-20 | Fixed conflict of merge | Sam |
| 2013-06-20 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask•••Conflicts:
wqflask/requirements.txt
wqflask/wqflask/correlation/show_corr_results.py
| Zachary Sloan |
| 2013-06-20 | Copied over Lei's correlation code from after he pushed yesterday | Zachary Sloan |
| 2013-06-19 | Added nginx_conf directory to git tracking | Lei Yan |
| 2013-06-19 | Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns•••in the correlation page weren't displaying
| Lei Yan |
| 2013-06-19 | Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask•••Conflicts:
wqflask/base/data_set.py
| Lei Yan |
| 2013-06-19 | :Merge git://github.com/zsloan/genenetwork into flask•••Conflicts:
wqflask/requirements.txt
| Lei Yan |
| 2013-06-19 | Changed QTL parameter name to "get_qtl_info" on trait.py and•••other places it's called, like search_results.py
Added other trait info fields to correlation results page
| Lei Yan |
| 2013-06-19 | When I pulled Sam's code the search page was changed from GET to•••POST in views.py, so I had to change it back
| Zachary Sloan |
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask•••Conflicts:
wqflask/base/data_set.py
wqflask/wqflask/views.py
Fixed a couple conflicts to merge Lei's code related to the correlation page
| Zachary Sloan |
| 2013-06-14 | Merge git://github.com/leiyan/GeneNetwork2-Python into flask•••Conflicts:
wqflask/requirements.txt
Made small change for merge with Lei's branch
| Zachary Sloan |
| 2013-06-13 | Made a few changes while trying to figure out why the search isn't working•••post-merging with Sam's code
| Zachary Sloan |
| 2013-06-13 | Merge /home/sam/gene into flask•••Conflicts:
wqflask/wqflask/templates/index_page.html
Merging the code on Sam's branch onto my own
| Zachary Sloan |
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a•••dataset object for each trait in the correlation results
Added new fields/columns for each trait in the correlation result table
(max LRS, max LRS location, mean expression)
Fixed error if trait doesn't have these fields
| Lei Yan |
