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with an empty collection
Fixed tables in correlation page and trait page to separate index column and checkbox column
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A few minor GUI changes on trait page (button names, locations, etc)
Fixed "pressing enter to search" on index page
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Removed bootstrap and additive effect options until I can get them working correctly
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Added Y axis line to bar histogram
Added link to GN1 in menu bar
Fixed mapping results table to look more like other tables (though still has initial issue with header being too short)
Added Tissue to global search results and trait page
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phenotype)
Fixed issue where LRS and LOD are sometimes labeled incorrectly
Changed the header of the trait page
Added link to GN1 in header
Fixxed an issue that made permutations not work with pylmm
Fixed "sign in" button when creating a collection while not logged in
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tables and later attach its functionality to the existing Download Table button
Fixed an issue where rows wouldn't uncheck with backspacing in Select Top text area;
the last commit just fixed the highlighting, not the checkboxes
Some changes in progress towards trying to fix the additive effect issue; the problem is
that the lod_chart.js code writes each chromosome as one d3 path, so I can't change the color
for individual segments within that path. I'll have to completely change the way
the path is drawn for the additive effect
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for all of them, among other minor changes
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select top)
Search table and Select Top options added to global and regular search pages
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On branch master
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On branch master
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On branch master
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Made some more changes/improvements to various tables throughout the site
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On branch master
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On branch master
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updates
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On branch master
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On branch master
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more issues to resolve, like setting initial column width
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Made changes to the tables of correlation results, collections, and search results:
- Added resizeable columns to correlation results and collections, but not to search results
because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling
to the search results)
- Correlation results and collections are now in scrolling tables
- The style is the same across all of these tables now
Remaining issues:
- It doesn't seem like I can set the column width when initializing dataTables in
correlation results. I don't know why this is; it might be due to the table already being the size
of a full page. I want to be able to default to some good widths, even if the user can resize them
- I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is
due to having to put the text in a div.
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On branch master
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Conflicts:
wqflask/wqflask/templates/search_result_page.html
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On branch master
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incorrectly converted to json
Fixed GO search to work with combined searches
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Fixed several issues with existing searches; for example, the user can type "Chr" before the chromosome parameter (for example LRS=(9 999 Chr2 100 105) )
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appearing for human groups
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Currently we still usually get our samplelists from the genofile. This is
dumb because it results in us having a bunch of "dummy" genofiles for certain
data sets (seems to be mostly human ones). This means that checking for the
genofile alone isn't enough to determine if a mapping method should exist
for a given group
I wrote some code that will instead get the samplelist from the plink .fam file
for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy
.geno files, but we can't yet do so because it's currently the only place we seem to be storing
the sample list for some groups.
I also moved gemma into the plink directory to get it out of the git tree.
Since it uses the same files as plink, it doesn't make sense for it
to be in its own separate directory
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trait.py. Since I couldn't find the purpose of the assert statement I removed it.
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instead of getting an Internal Server Error
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and trans combined searches
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