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2021-10-14Merge pull request #605 from genenetwork/clustered_heatmapsBonfaceKilz
Clustered heatmaps
2021-10-14Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcnaBonfaceKilz
test template for gn3 wgcna
2021-10-13Fix issue where score_type being set wrong caused an error when exporting ↵zsloan
mapping results (a while back it was changed from LOD to -logP)
2021-10-13Update the action button textFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers.
2021-10-13resolve merge conflictAlexander Kabui
2021-10-13disable heatmap imageAlexander Kabui
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-10replace form input with select optionsAlexander Kabui
2021-10-10remove commented code and debug statementsAlexander Kabui
2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientationFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced.
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queriesBonfaceKilz
* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user.
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-10-01add xterm web terminalAlexander Kabui
2021-09-29test template for gn3 wgcnaAlexander Kabui
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codesBonfaceKilz
The stack trace causes the log file to grow into unmanageable sizes over time.
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-13 20:20:55 +0000