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2022-02-09autopep8 formattingAlexander Kabui
2022-02-09delete unused js packagesAlexander Kabui
2022-02-09autopep8 formattingAlexander Kabui
2022-02-09 fix for performing parametric analysisAlexander Kabui
2022-02-09minor template fixesAlexander Kabui
2022-02-09add trait lists and links to ctl plotAlexander Kabui
2022-02-09disabble autoslideAlexander Kabui
2022-02-09fix for ctl ui pageAlexander Kabui
2022-02-09endpoint to download network filesAlexander Kabui
2022-02-09btn download for network sif and node fileAlexander Kabui
2022-02-09modify ctl endpointAlexander Kabui
2022-02-09minor fixes for imagesAlexander Kabui
2022-02-09fix for dcor and LOD roundingAlexander Kabui
2022-02-09styling for carouselAlexander Kabui
2022-02-09add carousel for plotsAlexander Kabui
2022-02-09ui form modificationsAlexander Kabui
2022-02-09minor refactoring to destruct objectsAlexander Kabui
2022-02-09template file cleanupAlexander Kabui
2022-02-09rename template fileAlexander Kabui
2022-02-09minor bug fixesAlexander Kabui
2022-02-09process significant table resultsAlexander Kabui
2022-02-09delete class initiliazation objectAlexander Kabui
2022-02-09minor refactoringAlexander Kabui
2022-02-09pep8 formattingAlexander Kabui
2022-02-09fetch pheno input dataAlexander Kabui
2022-02-09parse geno input dataAlexander Kabui
2022-02-09parse input dataAlexander Kabui
2022-02-09init py file:call gn3 ctl apiAlexander Kabui
2022-02-09add ui template for ctlAlexander Kabui
2022-02-07Add 'api' to root of partial correlations URLFrederick Muriuki Muriithi
Add api to the root of the partial correlations URL, making it: /api/correlations/partial rather than: /correlations/partial
2022-02-05Update live jupyter notebooksjgart
2022-02-02Add covarstruct for rqtl mappingzsloan
Added a function for generating a covarstruct file required for R/qtl mapping This file contains info on whether each covariate is categorical or numerical and is generated by querying the TraitMetadata table in the DB
2022-01-31wqflask: Use a more semantic name when downloading samplesBonfaceKilz
* wqflask/wqflask/metadata_edits.py (get_sample_data_as_csv): Save csv file to be downloaded as "sample-name-<dataset_id>.csv" instead of "myplot.csv"
2022-01-29Fix bug: rho/r not set appropriatelyFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * The column heading, and the "data-column-heading" values depend on the correlation method. The initial idea had been to set these values up from the server. With the use of Javascript, however, the system defaults to using `r`, which is a bug when the method is any of the Spearman's methods.
2022-01-29Include the "Locus" in the displayFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
2022-01-29Provide missing argumentFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
2022-01-29Fix check for non-existent valuesFrederick Muriuki Muriithi
2022-01-29Hide template row instead of deleting itFrederick Muriuki Muriithi
2022-01-29Add more items to trait stringFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
2022-01-29Update styling: Display traits in a tabular-like formFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Display the trait details in a tabular-life form without using a table.
2022-01-29Include template to get rid of repetitive template codeFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * The generation of input elements that relate to the traits is very similar, therefore this commit pulls it out into a separate template that can be included where needed.
2022-01-29Display results for Geno and ProbeSet tablesFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add function to display the results for the **Geno** and **ProbeSet** tables.
2022-01-29Improve UI elementsFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Force results area to use up the entire width of the page * Set background colour and line-height of header row * Add some padding to the cells * Reorganise layout * Set up appropriate classes for .with-trait items
2022-01-29Format numbers for displayFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Format the numbers for display, to reduce the number of columns needed for display.
2022-01-29Display data for "Publish" datasetsFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Display the correlations results for "Publish" datasets.
2022-01-29Add templates for the results tablesFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add templates for the tables that will display the results.
2022-01-29Add elements to display results. Provide PoC JSFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Add some html elements to be used to display the results of running the partial correlations * Provide some initial proof-of-concept javascript code to animate the various elements and to use for displaying both successful and error results.
2022-01-29Use list rather than tupleFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Using a tuple, rather than a list for the HTTP methods in the route definition causes an error. This fixes that by using a list.
2022-01-29Skip the target traits selection stepFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Skip the target traits selection step, and only allow running the partial correlations against one of the available databases.
2022-01-29Implement better stylingFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Separate the form elements that allow selection from the elements that display previous selections. This allows styling of the "active" area of the form in a different way from the "display" area of the form, allowing the user to see information on their previous choices, even while making further selections for the partial correlations.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 21:39:55 +0000