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AgeCommit message (Expand)Author
2013-10-03Much more progess on logging in:•••* Verifying emails now works * Redid user manager Sam
2013-10-02Half the verification code for email addresses is doneSam
2013-09-27Downloaded the TableTools library so tables can be exported/savedLei Yan
2013-09-27Added trait links to correlation results•••Began adding the code that does the initial sort by literature correlation Lei Yan
2013-09-27User registration beginning to work (at least the first stage)Sam
2013-09-27Before fixing an issue in pbkdf2Sam
2013-09-24Did some work towards doing the tissue correlation for all traits•••in a dataset (in order to sort by tissue correlation instead of sample correlation). root
2013-09-24before deleting more of the security flask stuffSam
2013-09-24Just committing a few additions to the interval mapping codeZachary Sloan
2013-09-24Fixed the db_tools import in mrna_assay_tissue_data.py•••Added file for the interval mapping page and wrote code that gets/sets some parameters Zachary Sloan
2013-09-20Tissue correlation results work for sample r/rho correlation page•••and are written to the template Lei Yan
2013-09-13Merge /home/lei/geneZachary Sloan
2013-09-13Added file that will convert genofiles to plink ped/map filesZachary Sloan
2013-09-13Merge https://github.com/zsloan/genenetwork•••Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py Lei Yan
2013-09-06Registration form validaiton without js worksSam
2013-09-05Missed some files in last checkin so adding them nowSam
2013-09-05Switched registration form to no longer be modal, but instead it's own page•••Added validation of form using parsley.js Added password strength indicator using zxcvbn Sam
2013-09-05Adjusting to using our own registariton packageSam
2013-09-04Trying to trace through filesSam
2013-08-28Various changes to track down what happens with security modulesSam
2013-08-23Finally figured out where to put flask_security into the code•••Various registration template changes Sam
2013-08-23Working on user registration and added nginx conf for my branchSam
2013-08-21Fixed an issue where correlationFunction was being imported•••instead of its updated name correlation_function Zachary Sloan
2013-08-21Just removed a couple print statementsZachary Sloan
2013-08-15Removed the markers with no variance (and thus no p-values) from the•••manhattan plot Zachary Sloan
2013-08-14Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-14Made some changes related to getting marker regression working for•••some datasets Zachary Sloan
2013-08-14Removed some duplicate files in the maintenance folderZachary Sloan
2013-08-13Added several test files and the file with the class that•••they import (browser_test.py) Zachary Sloan
2013-08-08Fixed issue where points in marker regression manhattan plot•••weren't positioned on the x-axis Zachary Sloan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasets•••Improved the templates for a couple pages related to changing user password, etc Zachary Sloan
2013-08-02Fixed a bug related to groups with genofiles (not sure if it makes sense•••for them not to have genofiles yet) Zachary Sloan
2013-07-30Just added some print statements to debug an issue with LMM code•••Also added some to notes Zachary Sloan
2013-07-23Fixed a couple issues with he quick_search_table.py script•••Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) Zachary Sloan
2013-07-19Finished integrating code that reads sample list from geno files•••withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page Zachary Sloan
2013-07-19Created file gen_group_samplelists that iterates through all genofiles•••and builds each groups' samplelist Zachary Sloan
2013-07-18Added Amelie's rat data genotypes•••Got human mapping mostly working Fixed dataset dropdown menus Zachary Sloan
2013-07-18Merge branch 'master' of https://github.com/zsloan/genenetwork•••Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json Zachary Sloan
2013-07-18Added to installation notes•••Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) Zachary Sloan
2013-07-17Fixed gen_select_dataset.py•••Appended redis installation info to notes Zachary Sloan
2013-07-16Merge branch 'master' of https://github.com/zsloan/genenetwork•••Conflicts: misc/gn_installation_notes.txt Zachary Sloan
2013-07-16Wrote code that can get a dataset's type for every single GN•••dataset; previously we could not view traits in datasets that were not in the DBType table in the database Zachary Sloan
2013-07-12Rewrote code related to getting the tissue correlation column to display•••Created new files for mrna assay tissue data and commonly used db query related functions Lei Yan
2013-07-11Began changing the style of the code related to the tissue correlation column•••of the correlation page Lei Yan
2013-07-10Updated gn_installation_notesZachary Sloan
2013-07-09Committing installation notes before editing them moreZachary Sloan
2013-07-05Change Correlation table value formatLei Yan
2013-07-03Updated notes and created requirements.txt fileZachary Sloan
2013-07-03Merge /home/zas1024/geneLei Yan
2013-07-03Made the table in the group manager sortable, etcZachary Sloan
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