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This patch removes TableTools. I don't think we use it. I have compared the look and feel
of below pages and I see no difference. If that is correct we can simply ditch it by
merging this PR. Note that if we are using such functionality this package is considered
obsolete by the authors.
According to https://datatables.net/extensions/tabletools/:
This extension has now been retired and has been replaced by the
Buttons and Select extensions. The documentation is retained for
legacy reference only. New projects should use Buttons and Select in
preference to TableTools. Moving Tabletools CSS
--- a/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css
+++ b/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css
@@ -319,3 +319,8 @@ div.DTTT_collection a.DTTT_button {
line-height: 20px;
}
+.no-sort::after { display: none!important; }
+.no-sort { pointer-events: none!important;
+ cursor: default!important;
+}
+
wqflask/wqflask/templates/correlation_matrix.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/collections/list.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/search_error.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/corr_scatterplot.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
wqflask/wqflask/templates/pair_scan_results.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
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https://github.com/genenetwork/genenetwork2/issues/310
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Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE.
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Minor edits and document on ES
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Removed a variety of scripts that weren't being used on the trait page
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Testing rm bloat (jqplot and ckeditor)
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Removed fast correlation option because it doesn't work well with gunicorn
Changed the type of logger from error to debug when logging which page is being visited in views.py
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https://github.com/genenetwork/genenetwork2/issues/296
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https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d
- Renamed WQFLASK_SETTINGS to GN2_SETTINGS
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* Ensure the key exists in the json object/dictionary, before trying to
use it to retrieve a value.
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* Provide connections to elasticsearch at various points in the code.
These oversight was caught while running tests.
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* When logging in, if a user selects "Import existing collections", the
system would throw an exception, since Redis would return a NoneType,
which would then be accessed by json.loads(), which doesn't seem to
know how to process that.
This fixes that, by providing a string representing an empty json
array ("[]"), in place of the NoneType.
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PYTHONPATH needed as
it is now in the Guix build.
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* Update functions to make them more testable.
* Update code using updated functions.
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* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
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* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
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* After the email is sent to the user, there is need to provide a way
for the user to actually change their password, and have the results
saved.
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