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genenetwork2
acenteno
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blatseq_fix
chores/code-refactoring
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itp_covariate_testing
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partial-correlations
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penguin2
phewas
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refactor-data_set_py-20220920
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Author
2018-11-02
Minor fix since sometimes number of samples with values wasn't counted correctly
zsloan
2018-11-02
Committing some changes that get non-LOCO GEMMA mapping working without using...
zsloan
2018-11-01
Updated the way snpbrowser initializes parameters, in preparation for drawing...
zsloan
2018-10-24
- SNP Browser is mostly complete; just need to test more and add SNP density ...
zsloan
2018-10-12
Fixed issue that caused error when mapping single-chromosome, since a second ...
zsloan
2018-10-11
- Added fix for GEMMA LOCO
zsloan
2018-10-01
Missed something when previously resolving the merge conflict
zsloan
2018-10-01
Resolved conflict
zsloan
2018-10-01
- Can now remove cofactors from correlation scatterplot and select them by ju...
zsloan
2018-09-15
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
Pjotr Prins
2018-09-15
Run gemma without debug and checks in production
Pjotr Prins
2018-08-15
The issue with adding anonymous collections should be fixed now
zsloan
2018-08-14
Fixed minor issue in user_manager.py
zsloan
2018-08-14
Added cofactors to correlation scatterplot and changed it to use Plotly
zsloan
2018-07-06
Added square root transform options
zsloan
2018-07-02
Added option to transform/normalize trait sample values (log2 and qnorm) on t...
zsloan
2018-06-08
Added option to add traits to existing collection, which I had forgotten prev...
zsloan
2018-06-08
User collections (now stored in ElasticSearch) are reimplemented now and shou...
zsloan
2018-05-25
Fixed issue causing anonymous collections to not work on my branch and stagin...
zsloan
2018-05-17
Added script to quantile normalize a data set and enter its normalized sample...
zsloan
2018-05-01
Merge /home/lei/gene into testing
zsloan
2018-05-01
Removed all code related to using GEMMA with PLINK input files
zsloan
2018-04-27
Added marker filtering for data set groups with larger genotype files
zsloan
2018-04-23
Changed GEMMA mapping to use -lmm 2 (Likelihood ratio test) as a parameter in...
zsloan
2018-04-19
Changed width of top bar and a couple other html objects to 100% instead of s...
zsloan
2018-04-18
Removed a little more code in webqtlDatabaseFunction.py and do_search
zsloan
2018-04-16
Undoing changes to user_manager.py, because I think they may have caused some...
zsloan
2018-04-16
Resolved conflicts after pulling changes
zsloan
2018-04-16
Removed some unused code from collect.py and user_manager.py
zsloan
2018-04-16
Removed file tracer.py that wasn't being used
zsloan
2018-04-16
Removed a bunch of unused code from the following files:
zsloan
2018-04-16
Merge branch 'testing' of https://github.com/fredmanglis/genenetwork2 into te...
Pjotr Prins
2018-04-16
Remove statements that might be causing issues
Muriithi Frederick Muriuki
2018-04-16
login messages improved
Pjotr Prins
2018-04-16
Merge remote-tracking branch 'pjotrp/testing' into testing
Muriithi Frederick Muriuki
2018-04-16
Update mappings for Elasticsearch 6.2. Update logger
Muriithi Frederick Muriuki
2018-04-16
Docs on elasticsearch use
Pjotr Prins
2018-04-15
Deactivate analysis of email_address field
Muriithi Frederick Muriuki
2018-04-15
Fix issue with indentation
Muriithi Frederick Muriuki
2018-04-13
Check email provided on forgot password
Muriithi Frederick Muriuki
2018-04-13
Merge remote-tracking branch 'pjotrp/testing' into testing
Muriithi Frederick Muriuki
2018-04-12
README and docs
Pjotr Prins
2018-04-11
Added tissue correlation p value to correlation page results, since it was mi...
zsloan
2018-04-11
Merge remote-tracking branch 'pjotrp/testing' into testing
Muriithi Frederick Muriuki
2018-04-10
Most code in webqtlUtil.py has been removed. There is so little left that the...
zsloan
2018-04-09
Removed svg.py, which I know isn't used, and webqtlFormData, which I'm pretty...
zsloan
2018-04-09
Fixed issue that caused and error for certain types of mapping due to variabl...
zsloan
2018-04-09
Removed unused code from get_select_dataset.py and get_group_samplelists.py s...
zsloan
2018-04-09
Removed unused code from convert_geno_to_bimbam.py and corestats.py
zsloan
2018-04-09
Removed the basicStatistics directory/contents because nothing there was bein...
zsloan
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